Table 6 SNP markers significantly associated (−log10(P) ≥ 3) with yellow pigment content identified by GWAS (model MLM + K + PCs) in the whole tetraploid wheat collection and in the durum sub-population evaluated in two environments (F08, V09)
From: The carotenoid biosynthetic and catabolic genes in wheat and their association with yellow pigments
SNP marker | SNP allele | Chrom | Position cM | Whole collection | Durum subpopulation | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Â | Â | Â | Â | Allele frequency | F08 | V09 | Mean | R2 (%) | Effect | Allele frequency | F08 | V09 | Mean | R2 (%) | Effect |
IWB9815 | A/G | 3B | 93.8 | 0.15–0.85 | 3.4 | - | - |  |  |  | - | - | - |  |  |
IWB58319 | A/G | 4B | 17.7 | 0.50–0.50 | - | 3.8 | 3.0 | 5.3 | −0.84 | 0.55–0.45 | - | 3.8 | 3.3 | 10.9 | −1.17 |
IWB72011 | C/T | 4B | 43.9 | 0.67–0.33 | - | - | - |  |  | 0.84–0.16 | - | 3.3 | 3.0 | 10.9 | 1.79 |
IWB68046 | A/G | 5A | 84.2 | 0.84–0.16 | 3.0 | - | - |  |  |  | - | - | - |  |  |
IWB57337 | A/G | 5B | 53.4 | 0.70–0.30 | - | 3.1 | - |  |  |  | - | - | - |  |  |
IWB72567 | C/T | 7A | 102.3 | 0.53–0.47 | 6.0 | 5.5 | 6.1 | 13.6 | −1.54 | 0.28–0.72 | 5.7 | 4.9 | 5.4 | 22.1 | −1.90 |
IWB49295 | A/G | 7A | 203.4 | 0.34–0–66 | - | 3.8 | 4.0 | 7.2 | −1,10 | 0.19–0.81 | - | 3.2 | 3.2 | 10.4 | −1.43 |