Table 3 Motif pairs that are part of transcription terminators
From: Unsupervised statistical discovery of spaced motifs in prokaryotic genomes
Genome | Pattern |
|---|---|
Actinobacillus pleuropneumoniae serovar 5b L20 | CAAAA(N)13TGACC CAAAA(N)15ACCGC GGTCT(N)15TTGCA TGCAA(N)15CGACC TGCAA(N)16AACCG GCAAA(N)16ACCGC TTGCA(N)16AGACC GCGGT(N)16TTTAC GCAAA(N)17CCGCT CGGTC(N)17TGCAA TTTGC(N)18GACCG AAGCG(N)19TTGCA GCGGT(N)19GCAAA TTTTG(N)19GACCG CGGTC(N)38GACCG AGCGG(N)40GACCG |
Haemophilus influenzae Rd KW20 | GGTCA(N)10TGTTT GGTCA(N)11GTTTT CGGTC(N)12GTTTT GCGGT(N)12AGTTT GCGGT(N)12TGTTT GGTCA(N)12TTTTT CGGTT(N)12GTTTT TGCGG(N)13AGTTT CGGTC(N)13TTTTT GCGGT(N)13GTTTT TGCGG(N)13TGTTT CGGTA(N)13TTTTT CGGTT(N)13TTTTT GCGGT(N)13ATTTT GCGGT(N)14TTTTT GTGCG(N)14TGTTT TGCGG(N)14GTTTT TGCGG(N)15TTTTT AGTGC(N)15TGTTT GTGCG(N)15GTTTT GCGGT(N)15TTTTG AGTGC(N)16GTTTT AAACA(N)16CACTT TGCGG(N)16TTTTG GTGCG(N)16TTTTT |