Table 7 Selected potential novel motifs
From: Unsupervised statistical discovery of spaced motifs in prokaryotic genomes
Genome | Motif Paira | Gene | Intergenic | Overlap |
|---|---|---|---|---|
Agrobacterium radiobacter K84 | TTAAT(N)5ATTAA | 0% | 100% | 0% |
Bifidobacterium animalis lactis AD011 | GGGACAG(N)15TGTCCC | 0% | 95% | 5% |
Desulfatibacillum alkenivorans AK 01 | CCTAC(N)19TAGGT | 3% | 97% | 0% |
Clostridium kluyveri DSM 555 | TTGAC(N)19ATAAT | 16% | 83% | 1% |
Acidovorax ebreus TPSY | GCTTAT(N)5AAGCG | 4% | 94% | 2% |
Bradyrhizobium japonicum USDA 110 | GAATCCAT(N)23ATGGATTC | 0% | 90% | 10% |
Polaromonas naphthalenivorans CJ2 | ATAGCT(N)22CAAAAG | 14% | 81% | 5% |
Petrotoga mobilis SJ95 | ATTATA(N)18GTCAA | 5% | 86% | 9% |