From: ChimPipe: accurate detection of fusion genes and transcription-induced chimeras from RNA-seq data
Chimeric junction identifier | Gene A | Gene B | SK-N-SH_RA:4 | AG04450:4 | MCF-7:4 | H1-hESC:7 | GM12878:9 | A549:4 | HUVEC:11 | NHEK:13 | HepG2:11 | BJ:2 | NHLF:4 | HSMM:4 | K562:16 | HeLa-S3:11 | HMEC:2 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr19_34957919 | UBA2 | WTIP | 7.3:0.5 | 3:0.3 | 3.5:0.8 | 2.3:0.7 | 3.1:1.6 | 12.5:0.8 | 4.2:1.5 | 2.2:0.2 | 2.5:0.2 | 3:0 | 2.3:1.3 | 4:5.3 | 7.1:1.2 | 6.6:1.7 | 6:2.5 |
_+:chr19_ | |||||||||||||||||
34981281_+ | |||||||||||||||||
chr11_85685751_-:chr11_85469157_- | PICALM | SYTL2 | 0:0 | 4.5:0 | 5.3:90.8 | 0:0 | 1.2:0.2 | 0.8:0 | 0.7:0 | 0.9:0 | 0.2:0.1 | 1.5:0 | 0:0 | 1.8:0.3 | 2.3:0.1 | 0.3:0 | 0:0 |
chr17_72200329_ | RPL38 | TTYH2 | 2.8:0 | 0.3:0 | 0.5:0 | 0.3:0.4 | 4.3:5.7 | 0.5:0 | 0.9:0.7 | 0.5:0 | 0.6:1.4 | 0.5:0 | 0.3:0 | 0.3:0.5 | 0.3:0.7 | 0.1:0 | 0:0 |
+:chr17_72218624_+ | |||||||||||||||||
chr16_19603196_+ | C16orf62 | IQCK | 0:0 | 0:0 | 33.8:65.8 | 0:0 | 0:0 | 0:0 | 0:0 | 0:0 | 0:0 | 0:0 | 0:0 | 0:0 | 0:0 | 0:0 | 0:0 |
:chr16_19867809_+ |