Table 3 QTLs identified for 11 fruit quality traits

Fruit weight

fw2.1

T2

51.6–52

SpimpSNP_chr2_51653038 - SpimpSNP_chr2_52236461

3.1

15

S. pimpinellifolium

Fruit weight

fw4.1

T4

22.5–22.9

SpimpSNP_chr4_21588199 - SpimpSNP_chr4_23188806

5.6

26

S. lycopersicum

Fruit weight

fw6.1

T6

24.2–19.8

SpimpSNP_chr6_23671779 - SpimpSNP_chr6_24889074

3.6

17

S. lycopersicum

Dry matter weight

dw7.1

T7

6–7.8

SpimpSNP_chr7_2225863 - SpimpSNP_chr7_9627011

4.1

19

S. lycopersicum

Dry matter weight

dw7.2

T7

27.8–29.4

SpimpSNP_chr7_26481282 - SpimpSNP_chr7_28434174

3.2

15

S. lycopersicum

Dry matter weight

dw7.3

T7

39.6–44.8

SpimpSNP_chr7_39834929 - SpimpSNP_chr7_44678356

3

14

S. lycopersicum

External color

exc1.1

T1

67.6–67.8

SpimpSNP_chr3_67613866 - SpimpSNP_chr3_67813317

3

11

S. pimpinellifolium

External color

exc2.1

T2

62.3–62.5

SpimpSNP_chr4_62352850 - SpimpSNP_chr4_62544061

3

10

S. pimpinellifolium

Internal color

inc2.1

T2

23.6–23.8

SpimpSNP_chr2_23655570 - SpimpSNP_chr2_24268112

4.9

23

S. pimpinellifolium

Internal color

inc2.2

T2

34.8

SpimpSNP_chr2_34886535–SpimpSNP_chr2_35242658

4.5

20

S. pimpinellifolium

Internal color

inc2.3

T2

2–3.8

SpimpSNP_chr2_640497–SpimpSNP_chr2_3894978

5

20

S. pimpinellifolium

Internal color

inc4.1

T4

16.5–16.7

SpimpSNP_chr4_16565256 - SpimpSNP_chr4_18177074

3.4

15

S. pimpinellifolium

Internal color

inc6.1

T6

30.4

SpimpSNP_chr6_30399172 - SpimpSNP_chr6_31009885

3.1

14

S. lycopersicum

Internal color

inc7.1

T7

34.3–34.4

SpimpSNP_chr7_33799287 - SpimpSNP_chr7_34463608

4.2

16

S. lycopersicum

Internal color

inc8.1

T8

10.4–11

SpimpSNP_chr8_10421348 - SpimpSNP_chr8_15081462

3.8

17

S. pimpinellifolium

Internal color

inc10.1

T10

51.4

SpimpSNP_chr10_51446730 - SpimpSNP_chr10_53466408

5.5

24

S. pimpinellifolium

Internal color

inc12.1

T12

23.7–24.1

SpimpSNP_chr12_21186959 - SpimpSNP_chr12_24152718

5.2

23

S. lycopersicum

Locule number

ln2.1

T2

47.2–51.4

SpimpSNP_chr2_47074933 -SpimpSNP_chr2_51653038

7

30

S. lycopersicum

Locule number

ln4.1

T4

5.7

SpimpSNP_chr4_5137285 - SpimpSNP_chr4_6526895

3.8

13

S. lycopersicum

Wall thickness

wall10.1

T10

21.6–22.6

SpimpSNP_chr10_19888032 - SpimpSNP_chr10_23051275

3.4

15

S. lycopersicum

Wall thickness

wall12.1

T12

62.5

SpimpSNP_chr12_52326486 - SpimpSNP_chr12_63747215

3

13

S. lycopersicum

Firmness

firm1.1

T1

2.8–3

SpimpSNP_chr1_2881522 - SpimpSNP_chr1_8892676

3.5

14

S. pimpinellifolium

Firmness

firm1.2

T1

80.2–80.4

SpimpSNP_chr1_79834277 - SpimpSNP_chr1_80687203

3.8

18

S. pimpinellifolium

Firmness

firm4.1

T4

2.5

SpimpSNP_chr4_1705692 - SpimpSNP_chr4_2593932

4

19

S. pimpinellifolium

Firmness

firm10.1

T10

SpimpSNP_chr10_1689980 - SpimpSNP_chr10_2014825

5.3

24

S. pimpinellifolium

Fruit shape

fs4.1

T4

5.7

SpimpSNP_chr4_5717067 - SpimpSNP_chr4_6526895

6,1

26

S. lycopersicum

Fruit shape

fs10.1

T10

11.2–11.8

SpimpSNP_chr10_10418801 -SpimpSNP_chr10_12085921

5.2

14

S. lycopersicum

Fruit shape

fs12.1

T12

33.1–35.5

SpimpSNP_chr12_33126847 - SpimpSNP_chr12_36718114

5.5

20

S. lycopersicum

Fruit shape

fs12.2

T12

59.7–62.7

SpimpSNP_chr12_52326486 - SpimpSNP_chr12_63747215

5.2

23

S. lycopersicum

Stem scar

sc7.1

T7

64.4

SpimpSNP_chr7_64272106 - SpimpSNP_chr7_64876647

3.6

16

S. lycopersicum

Stem scar

sc10.1

T10

29.8–35.6

SpimpSNP_chr10_36881278 - SpimpSNP_chr10_29632232

3.3

3

S. pimpinellifolium

Soluble solids content

ssc1.1

T1

26.6–27.2

SpimpSNP_chr1_24085783 - SpimpSNP_chr1_27278048

5.3

23

S. pimpinellifolium

Soluble solids content

ssc2.1

T2

36.6–38.6

SpimpSNP_chr2_36642750 - SpimpSNP_chr2_38643210

8.2

34

S. pimpinellifolium

Soluble solids content

ssc8.1

T8

60.2–61.2

SpimpSNP_chr8_60424301 - SpimpSNP_chr8_61250753

3.7

17

S. lycopersicum

Soluble solids content

ssc10.1

T10

22.8

SpimpSNP_chr10_23051275 - SpimpSNP_chr10_19888032

3.6

17

S. lycopersicum

pH

ph1.1

T1

66.8

SpimpSNP_chr1_65817896 - SpimpSNP_chr1_67006382

12

47

S. lycopersicum

pH

ph8.1

T8

63.8

SpimpSNP_chr8_63683606 - SpimpSNP_chr9_755740

6.4

14

S. lycopersicum