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Fig. 1 | BMC Genomics

Fig. 1

From: Organelle_PBA, a pipeline for assembling chloroplast and mitochondrial genomes from PacBio DNA sequencing data

Fig. 1

a- Remapping of Mus musculus PacBio DNA sequencing reads to a mitochondrial genome reference assembly. Each of the reads is represented by a darkgray line marking its position. b- Coverage for the PacBio read remapping for M. musculus. c- Alignment between the M. musculus reference mitochondrial genome (NC_005089.1) and the M. musculus assembly performed by Organelle_PBA. SNPs are represented by small horizontal blue lines. d- Remapping of Arabidopsis thaliana PacBio sequencing reads to a reference chloroplast genome assembly. Each of the reads is represented by a darkgray line marking its position. e- Coverage for the PacBio read remapping for A. thaliana. The inverted repeats are indicated by ~2X coverage relative to the LSC and SSC regions. f - Alignment between the A. thaliana reference chloroplast genome (NC_000932.1) and the A. thaliana assembly performed by Organelle_PBA. SNPs and Indels are represented by small horizontal blue and purple lines respectively. Reversed alignments are represented by darkgray lines

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