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Table 1 Summary of the M. musculus mitochondrial genome assembly

From: Organelle_PBA, a pipeline for assembling chloroplast and mitochondrial genomes from PacBio DNA sequencing data

Input reads

Reference

Mapped reads

% Bases mapped

Estimated depth (x)

Assembly size (bp)

Organelle completeda

50,000

Mus musculus

39

0.22

26

2678

NO

100,000

83

0.18

42

12,377

NO

163,477

138

0.22

69

16,294

YES

50,000

Mus caroli

35

0.20

24

NA

NO

100,000

69

0.16

36

12,332

NO

163,477

110

0.15

56

16,299

YES

50,000

Rattus norvegicus

26

0.16

19

NA

NO

100,000

53

0.13

30

10,247

NO

163,477

86

0.12

44

16,292

YES

50,000

Marmota himalayana

10

0.07

8

NA

NO

100,000

17

0.05

11

6580

NO

163,477

31

0.04

17

7193

NO

  1. aThe mitochondria genome assembly was considered complete when the difference in size compared to the reference genome was <10 nucleotides