Skip to main content

Table 2 Summary of the A. thaliana chloroplast genome assembly

From: Organelle_PBA, a pipeline for assembling chloroplast and mitochondrial genomes from PacBio DNA sequencing data

Input reads

Reference

Mapped reads

% Bases mapped

Estimated depth (x)

Assembly size (bp)

Organelle completeda

5000

Arabidopsis thaliana

287

23.06

23

42,978

NO

10,000

611

24.40

50

150,039

NO

50,000

3,013

23.79

244

154,472

YES

100,000

5,777

23.01

470

154,471

YES

163,448

9,409

23.15

771

154,474

YES

5000

Brassica napus

277

21.82

22

59,513

NO

10,000

591

23.08

48

153,132

NO

50,000

2923

23.08

239

154,474

YES

100,000

5565

22.13

457

154,481

YES

163,448

9102

22.43

755

154,473

YES

5000

Vitis vinifera

233

18.88

18

73,382

NO

10,000

507

20.62

41

151,984

NO

50,000

2516

20.67

204

154,469

YES

100,000

4807

20.04

393

154,477

YES

163,448

7855

20.28

649

154,472

YES

  1. aThe chloroplast genome assembly was considered complete when the difference in size compared to the reference genome was <10 nucleotides