Table 2 Differentially expressed miRNAs between infected and non-infected chickens (P < 0.05, Fold change > 2)
miRNA | Read counts in non-infected | Read counts in infected | Fold change(I/N) | Chromosome position |
|---|---|---|---|---|
gga-miR-490-5p | 0 | 52.25 | -a | chr1:58018956-58019049 |
gga-miR-chr13_10137 | 0 | 21.65 | -a | chr13:1853152-1853219 |
gga-miR chrUn_AADN03024004_45551 | 0 | 14.83 | -a | chrUn_AADN03024004:12315-12384 |
gga-miR-216a | 13.32 | 208.79 | 15.63 | chr3:301576-301682 |
gga-miR-217-5p | 35.76 | 250.64 | 6.65 | chr3:298908-299015 |
gga-miR-193a-3p | 31.91 | 153.08 | 4.27 | -------- |
gga-miR-1a-3p | 383.04 | 1784.26 | 4.26 | chr20:8472264-8472335 |
gga-miR-1b-3p | 298.63 | 1358.11 | 4.12 | chr23:4294311-4294375 |
gga-miR-chr6_35375 | 71.63 | 300.31 | 4.05 | chr6:2271072-2271138 |
gga-miR-490-3p | 283.61 | 1123.92 | 3.76 | chr1:58018956-58019049 |
gga-miR-133a-3p | 11115.44 | 43083.62 | 3.51 | chr2:102176852-102176939 |
gga-miR-133c-3p | 9130.66 | 33983.52 | 3.38 | chr23:4294450-4294529 |
gga-miR-133b | 8841.86 | 32748.91 | 3.36 | chr3:107209162-107209246 |
gga-miR-9-3p | 27.29 | 94.26 | 3.24 | chr28:3378846-3378934 |
gga-miR-chr13_10219 | 5157.10 | 16050.59 | 2.93 | chr13:7833540-7833603 |
gga-miR-chr13_10222 | 907675.18 | 2759302.93 | 2.86 | chr13:7834142-7834200 |
gga-miR-chr15_12339 | 221046.01 | 604996.23 | 2.59 | chr15:463481-463561 |
gga-miR-chr3_27485 | 334.10 | 844.81 | 2.41 | chr3:65480575-65480649 |
gga-miR-1416-5p | 177.32 | 420.27 | 2.30 | chrZ:34781500-34781589 |
gga-miR-125b-3p | 1026.62 | 2508.62 | 2.29 | chr1:98380667-98380757 |
gga-miR-125b-5p | 6220.19 | 14048.45 | 2.10 | chr1:98380667-98380757 |
gga-miR-193b-3p | 216.46 | 492.77 | 2.06 | chr14:762080-762163 |
gga-miR-chr15_12378 | 10551.58 | 5882.44 | −2.01 | chr15:4870074-4870145 |
gga-miR-215-5p | 6638307.42 | 3618379.46 | −2.02 | chr3:18143688-18143793 |
gga-miR-147 | 3180.31 | 1712.26 | −2.10 | chr10:10170160-10170230 |
gga-miR-1662 | 2111.61 | 1000.82 | −2.39 | chr2:1818924-1818997 |
gga-miR-chr7_36925 | 1908.29 | 858.02 | −2.50 | chr7:6845145-6845212 |
gga-miR-chr2_16700 | 141.08 | 49.79 | −2.78 | chr2:73136006-73136063 |
gga-miR-34a-5p | 278.17 | 99.89 | −2.93 | chr21:3266631-3266740 |
gga-miR-chr10_6644 | 27.94 | 3.81 | −3.85 | chr10:7087285-7087353 |
gga-miR-chr1_5477 | 36.18 | 4.44 | −4.69 | chr1:152779416-152779543 |
gga-miR-chr10_6507 | 51.26 | 13.08 | −4.88 | chr10:1689882-1689969 |
gga-miR-chrUn_AADN03024004_45550 | 16.72 | 1.27 | −5.56 | chrUn_AADN03024004:1006-1069 |
gga-miR-chr20_19772 | 62.48 | 14.47 | −6.10 | chr20:10132999-10133045 |
gga-miR-chr20_19953 | 281.37 | 24.37 | −15.02 | chr20:1049342-1049435 |
gga-miR-chr20_19955 | 281.37 | 24.37 | −15.02 | chr20:1153806-1153899 |
gga-miR-chr17_13654 | 40.24 | 1.27 | −15.13 | chr17:6752602-6752677 |