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Fig. 3 | BMC Genomics

Fig. 3

From: Genome-wide standing variation facilitates long-term response to bidirectional selection for antibody response in chickens

Fig. 3

Inferred major SEMA5A haplotypes in HAS39 (upper), HAS16 (middle upper), LAS39 (middle lower), LAR16 (lower). Positions are colored based on their contribution to different haplotypes: allele frequencies for SNPs in green contribute to Haplo2 and orange contribute to Haplo3. SNPs in blue contribute to both Haplo2 and Haplo3, so where both of these haplotypes are present, blue positions will have an allele frequency approximately equal to 1 as in LAS39 where only one haplotype is present. In the case of LAR16 and HAR16, the blue positions will have an allele frequency approximate to Haplo2

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