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Table 3 Genetic effects of SNP markers associated with log2(day 5 antibody titers) at a 20% FDR threshold in the F2 intercross of Virginia Antibody lines

From: Genome-wide standing variation facilitates long-term response to bidirectional selection for antibody response in chickens

Marker

Chromosomea

Positionb (bp)

Estimatec ± std. err.

P-valued

Sign.e

rs14799859

GGA1

23,275,033

1.7 ± 0.5

0.0017

5%

rs15307852

GGA1

69,259,824

1.5 ± 0.5

0.0019

5%

rs14207559

GGA2

78,180,370

2.1 ± 0.4

3.6 × 10−6

5%

rs14242328

GGA2

119,824,660

1.6 ± 0.4

0.0006

5%

rs14096690

GGA16

192,620

1.2 ± 0.4

0.0050

20%

  1. a GGA Gallus gallus autosome
  2. bNovember 2011 (galGal4) assembly
  3. cAdditive genetic effect in model including all tabulated loci
  4. dSignificance for additive genetic effect in model including all tabulated loci
  5. eSignificance thresholds 5/20% FDR based on which markers were selected
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