Comparative genomics of host adaptive traits in Xanthomonas translucens pv. graminis

Hersemann, Lena; Wibberg, Daniel; Blom, Jochen; Goesmann, Alexander; Widmer, Franco; Vorhölter, Frank-Jörg; Kölliker, Roland

doi:10.1186/s12864-016-3422-7

BMC Genomics

Table 5 True singletons of the X. t. pv. graminis core genome identified in comparison with non-graminis X. translucens strains

From: Comparative genomics of host adaptive traits in Xanthomonas translucens pv. graminis

Category^a	Gene^b	Description	Domain^c	Feature^d	Homology^e
NA	0088	glycerophosphodiester phosphodiesterase	cd08566	S	X, O
NA	0362	putative phosphate ABC transporter	cl21456	S	X, O
NA	0369	biopolymer transporter ExbD	COG0848
NA	0370	biopolymer transporter ExbB	COG0811	S	X, O
NA	0371	hemolysin activator protein	COG2831		X, O
NA	0436	TonB-dependent receptor	TIGR01782	S	X, O
NA	0438	putative MFS/sugar transport protein	pfam13347		X, O
NA	0441	putative glycerophosphodiester phosphodiesterase	cd08566	S
NA	1321	MFS transporter	pfam07690
NA	2335	alpha-galactosidase	cd14792	S	X, O
VI	0478	putative type III effector protein, XopE class	-	PIP	O
VI	0894	putative cysteine protease, YopT-like	cl04145		O
VI	1903	putative type III effector protein, XopJ class	cl07849	PIP	X, O
VI	2268	putative type III effector protein	-	PIP	X, O
RM	0087	peptidylprolyl isomerase	pfam00639	S	X
RM	0480	XRE family transcriptional regulator	COG1396		X, O
RM	1782	putative toxin-antitoxin system toxin component, VapC/FitB-like	cd09861
RM	1783	putative toxin-antitoxin system antitoxin component, SpoVT/AbrB-like	smart00966
RM	2588	type I restriction and modification protein subunit M	TIGR00497		X, O
RM	2592	putative type I restriction and modification protein subunit S	COG0732		O
RM	2593	type I restriction and modification protein subunit R	COG0610		X, O
RM	2620	toxin-antitoxin system toxin component, RelE/ParE family	COG3668
RM	2990	site-specific DNA-methyltransferase	COG0863		O
RM	3368	C-5 cytosine-specific DNA methylase	COG0270		X, O
AM	0364	filamentous hemagglutinin, partial	-		X, O
AM	0365	filamentous hemagglutinin, partial	smart00912	S	X, O
AM	2129	type IV pilus assembly protein, tip-associated adhesin PilY1	COG3419		X, O
AM	2130	type IV pilus assembly protein PilX	COG4726
OF	1784	invertase	cd03768		X, O
OF	2590	putative ABC-type ATPase	cl21455

^a Abbreviations: NA nutrient acquisition, VI virulence, RM regulation and modification, AM adhesion and motility, OF other function
^b 4-digit number corresponding to the gene ID with the prefix XTGART29_. Listed genes were identified as true singletons of the Xtg core genome when compared against X. t. pv. arrhenatheri LMG 727, X. t. pv. poae LMG 728, X. t. pv. phlei LMG 730, X. t. pv. cerealis CFBP 2541, X. t. pv. undulosa Xtu4699, X. t. pv. translucens DSM 18974 and X. t. DAR61454
^c Conserved domains (E-value < 10⁻⁰⁶)
^d Features describing the presence of an upstream PIP-box (PIP) or a signal peptide (S)
^e Homology to at least one other Xanthomonas species (X) or another bacterial genus (O; E-value < 10⁻⁵⁰)

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ISSN: 1471-2164

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