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Fig. 1 | BMC Genomics

Fig. 1

From: Short bowel syndrome results in increased gene expression associated with proliferation, inflammation, bile acid synthesis and immune system activation: RNA sequencing a zebrafish SBS model

Fig. 1

SBS zebrafish have significantly different gene expression than sham. a SBS zebrafish lost a significant percentage of preoperative weight compared to sham zebrafish over 2 weeks. b The biological coefficient variation over average log counts per million mapped reads with the trend line in blue and the common in red. c The volcano plot of sequenced genes showing log fold change. Each gene is expressed by a dot with the red dots representing an FDR corrected p-value <0.05 with significant upregulated SBS genes >1.5 and downregulated genes <1.5. d Principal component analysis compared the SBS zebrafish intestine to the sham group. (E) ERCC graph comparing observed log2 fold change (FC) to the expected log2 FC with good correlation

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BMC Genomics

ISSN: 1471-2164

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