Table 1 Description of cell cycle studies used for the meta-analysis
From: Meta-analysis reveals conserved cell cycle transcriptional network across multiple human cell types
Cell line | Synchronisation method | Time points | Array platform | Study | Ac. Number | Raw data availability | Cell cycle genes (Entrez ID) |
|---|---|---|---|---|---|---|---|
NHDF (primary fibroblasts) | Exp 1: Thy block Exp2: serum starvation | 0 h–32 h, 2 h interval 0 h–32 h, 2 h interval | Affymetrix U133A 2.0 | Bar-Joseph et al. 2008 [7] | E-TABM-263 | yes | 480 |
HeLa cells | Exp 1: Thy block Exp 2: Thy block Exp 3: Thy block | 0 h–12 h, 2 h interval 0 h–12 h, 2 h interval 0 h–12 h, 2 h interval | Affymetrix HuGene 1.0st | Sadasivam et al. 2011 | GSE26922 | yes | _ |
HaCaT cells | Exp 1: Thy block Exp 2: Thy block Exp 3:Thy block | 0 h–33 h, 3 h interval 0 h–33 h, 3 h interval 0 h–33 h, 3 h interval | Affymetrix HG-U133 | Diaz et al. 2013 | E-MTAB-454 | yes | 1249 |
U2OS cells | Exp 1:Thy block Exp 2:Thy block Exp 3:Thy block Exp 4:Noc block | 0 h–46 h, 2 h interval 0 h–38 h, 2 h interval 0 h–46 h, 2 h interval 0 h–44 h, 2 h interval | Agilent Oligonucleotide arrays | Grant et al. 2013 [10] | GSE521000 | no | 1871 |