Fig. 3
From: Single genome retrieval of context-dependent variability in mutation rates for human germline
Transposon exposed (Trek) \(r_{i,j}^{core}\) substitution rate constants of the human genome. The boxplots are shown for each i→j substitution type inferred from the hominoid L1 remnants spread across the human genome. Each point comes from a specific position in the L1 element, reflecting the substitution rate constant averaged across multiple occurrences of that specific position with the same sequence-context in multiple regions of the human genome. The complementary i→j pairs are plotted in adjacency. The median values of the overall substitution rates (\(r_{i,j}^{sb}\)) in byr −1 (billion years) unit, averaged across the varying sequence-context within the L1 elements, are shown on the top