Table 1 Summary of sequencing results
Paired-end reads | Total base pairs | 19,919,299 |
|---|---|---|
Median length | 171 x 2 | |
Q20 (%) | 99 | |
Q30 (%) | 91 | |
De novo assembly | Total contigs | 58,013 |
Transdecoder ORFs | 24,329 | |
Total bp in all contigs | 64,257,972 | |
Median contig size (bp) | 443 | |
Contigs larger than 1Kb | 19,414 | |
N50 | 2454 | |
Annotated contigs | NR | 26,066 |
KEGG | 25,312 | |
Mapping | Paired reads aligned concordantly 1 time (%) | 66.78 |
Overall alignment rate (%) | 95.01 |