Table 2 A partial list of the GO analysis results of target genes predicted by two different putative complexes using the K562 USF2 ChIP-seq data
From: Inferring condition-specific targets of human TF-TF complexes using ChIP-seq data
Rank | Enrichment GO term | p-value |
|---|---|---|
Predicted USF2-IRF1 complexa | ||
1 | GO:0032870 cellular response to hormone stimulus | 2.15E-07 |
2 | GO:0033572 transferrin transport | 7.16E-07 |
3 | GO:0015682 ferric iron transport | 7.16E-07 |
4 | GO:0071495 cellular response to endogenous stimulus | 1.20E-06 |
5 | GO:0071375 cellular response to peptide hormone stimulus | 1.55E-06 |
6 | GO:0015031 protein transport | 2.94E-06 |
7 | GO:0044437 vacuolar part | 3.21E-06 |
8 | GO:0005654 nucleoplasm | 3.82E-06 |
9 | GO:0043434 response to peptide hormone stimulus | 7.11E-06 |
10 | GO:0006826 iron ion transport | 7.92E-06 |
Predicted USF2-NFYA complexb | ||
1 | GO:0004536 deoxyribonuclease activity | 1.53E-04 |
2 | GO:0016798 hydrolase activity, acting on glycosyl bonds | 2.58E-04 |
3 | GO:0019104 DNA N-glycosylase activity | 3.79E-04 |
4 | GO:0006886 intracellular protein transport | 5.00E-04 |
5 | GO:0044419 interspecies interaction between organisms | 5.43E-04 |
6 | GO:0006308 DNA catabolic process | 6.97E-04 |
7 | GO:0044265 cellular macromolecule catabolic process | 7.91E-04 |
8 | GO:0016799 hydrolase activity, hydrolysing N-glycosyl compounds | 1.16E-03 |
9 | GO:0060674 placenta blood vessel development | 1.29E-03 |
10 | GO:0032507 maintenance of protein location in cell | 1.42E-03 |