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Table 1 Sample and library preparations used as input for our equine transcriptome

From: Tissue resolved, gene structure refined equine transcriptome

Tissue Library Preparation Library Characteristics #Samples #Frag (M) #bp (Gb) Reference
Brainstem RiboRNA-depleted PEl00bp, stranded 8* 166.73 33.68 Finno et al., 2016 [13]
Cerebellum RiboRNA-depleted PEl00bp, stranded 12 411.48 82.3 Scott et al., 2016 [23]
Muscle Poly-A capture PE125bp, stranded 12 301.94 76.08  
Retina Poly-A captured PE80bp unstranded 2 20.3 3.28 Bellone et al., 2013
Spinal Cord RiboRNA-depleted PEl00bp, stranded 16* 403 81.4 Finno et al., 2016 [13]
Skin Poly-A captured PE80bp, unstranded 2 18.54 3 Holl et al., 2016
Poly-A captured SE80bp, unstranded 2 16.57 1.34 Holl et al., 2016
Poly-A captured SE95bp unstranded 3 105.51 10.02 Bellone et al., 2013
Embryo ICM Ovation RNA-seq PEl00bp, unstranded 3 126.32 25.26 Iqbal et al., 2014
Ovation RNA-seq SEl00bp, unstranded 3 115.21 11.52 Iqbal et al., 2014
Embryo TE Ovation RNA-seq PEl00bp, unstranded 3 129.84 25.96 Iqbal et al., 2014
Ovation RNA-seq SEl00bp, unstranded 3 102.26 10.23 Iqbal et al., 2014
Total     1917.7 364.07  
  1. Notes: *Seven individuals had both brainstem and spinal cord tissue collected from them. Seven of the skin samples were taken from 5 individuals and one individual had both retina and skin sampled, bringing our total number of individuals to 59