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Table 3 Tissue-specific splicing rate as calculated by Cuffcompare, with relevant number of multi-exonic transcripts and multi-transcript loci per tissue

From: Tissue resolved, gene structure refined equine transcriptome

  Embryo ICM Embryo TE Skin Brainstem Cerebellum Retina Spinal cord Muscle
Genes 33,998 32,050 30,003 34,792 36,139 26,733 34,980 29,549
Transcripts 57,400 54,424 51,995 62,993 66,364 47,095 66,001 52,000
multi-exon transcripts 44,069 42,433 42,432 49,346 51,640 39,420 52,175 42,483
Multi-transcript loci 11,938 11,461 11,797 13,066 13,334 10,866 13,352 11,560
Splicing rate 1.7 1.7 1.7 1.8 1.8 1.8 1.9 1.8