Skip to main content

Table 3 Tissue-specific splicing rate as calculated by Cuffcompare, with relevant number of multi-exonic transcripts and multi-transcript loci per tissue

From: Tissue resolved, gene structure refined equine transcriptome

 

Embryo ICM

Embryo TE

Skin

Brainstem

Cerebellum

Retina

Spinal cord

Muscle

Genes

33,998

32,050

30,003

34,792

36,139

26,733

34,980

29,549

Transcripts

57,400

54,424

51,995

62,993

66,364

47,095

66,001

52,000

multi-exon transcripts

44,069

42,433

42,432

49,346

51,640

39,420

52,175

42,483

Multi-transcript loci

11,938

11,461

11,797

13,066

13,334

10,866

13,352

11,560

Splicing rate

1.7

1.7

1.7

1.8

1.8

1.8

1.9

1.8