Table 3 Gene cluster content of Eurhodophytina

A

orf243 [ycf27 or ompR] , psbD, psbC, orf198 [upp], ycf19, rps16, ycf65, groEL, trnR(ACG), syh, trnQ(UUG), trnR(CCU)

B

psbW, syfB, rps1, orf71 [ycf40 or thiS], trnH(GUG), ycf29 [tctD], ycf28 [ntcA], petB, petD, rpl12, rpl1, rpl11, trnW(CCA), orf277 [moeB], trnS(GGA), rpl9

C

dnaB, trnF(GAA), clpC

D

rpl19, trnV(GAC), trnY(GUA), trnT(GGU), ilvB, ycf33, argB, trnM(CAU), trnA(GGC), trnS(GCU), trnD(GUC), ftsH, trnS(CGA), psaE, psaH, psaN, psaT, psbB, ycf38, petF

E

rps14, petG, psbK, psbZ, trnG(GCC), dnaK, rpl3, rpl4, rpl23, rpl2, rps19, rpl22, rps3, rpl16, rpl29, rps17, rpl14, rpl24, rpl5, rps8, rpl6, rpl18, rps5, secY, rpl36, rps13, rps11, rpoA, rpl13, rps9, rpl31, rps12, rps7, tufA, rps10

F

psaB, psaA, accB, orf565 [ycf45], acpP, trnS(UGA), psaD, chlB, ycf59 [ascF], petN, orf71 [secG or ycf47], ycf36, trnM(CAU), orf199 [bas1], pbsA, rpl35, rpl20, preA, odpA [pdhA], odpB [pdhB], petA, tatC, apcE, apcA, apcB, atpE, atpB, ycf3, infB, rps18, rpl33, rps20, rpoB, rpoC1, rpoC2, rps2, tsf, atpI, atpH, atpG, atpF, atpD, atpA, ycf16 [sufC], ycf24 [sufB], trnL(CAA), ycf39, psbI, orf149 [ycf58], cemA, trnM(CAU)

G

infC, ilvH, trnL(UAA), trnC(GCA), cbbX, rbcS, rbcL, trxA, rpl28, trnT(UGU), psaL, ycf7 [petL], ycf4, trnG(UCC)

H

rps4, orf450 [ycf80], trnR(CCG), apcF, ycf20

I

trnL(UAG) , ycf35, psbA, rne, rpl27, rpl21, orf263 [ycf56], rpl32, ycf32 [psbY], rbcR, orf108 [ycf54], orf320 [ycf55], orf238 [ycf53], carA, petJ, psbV, accD, psbX, trnL(GAG) , fabH, apcD, psaJ, psaF, orf174 [ycf52], trnP(UGG), ycf37, rpl34, ycf46, chlN, chlL

J

psaM, chlI, trnR(UCU), trnV(UAC), orf263a [ycf63], ycf26 [dfr], psbE, psbF, psbL, psbJ, psaI, ftrB, ycf12 [psb30], orf327 [ycf62 or tilS], trnK(UUU), trpA, trnE(UUC), secA, ycf21, pgmA, cpcA, cpcB, ycf61 [rpoZ], gltB, psaC, ycf23, ycf22, accA, psaK, ccsA, cpeA, cpeB, ycf18 [nblA], cpcG

K

trnN(GUU), orf240 [dsbD or ccdA], ccs1, trpG, thiG, orf203 [ycf60], rps6

L

Rrf

M

Rrl

N

trnA(UGC), trnI(GAC)

P

rrs