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Table 1 Population genetic parameters inferred from 19 microsatellites and genome-wide SNPs for nine populations of Arabidopsis halleri. Allelic richness (A r), expected heterozygosity (SSR-H e) and inbreeding coefficient F IS including its one-sided p-value (i.e. heterozygote deficiency) are given. No F IS value was significantly different from zero after Bonferroni correction. θ Watterson was calculated for 20,617 genes. Expected heterozygosity (SNP-H e) was calculated from all SNPs across the genome. Tajima’s D was calculated for 22,210 genes, p-values refer to deviations from zero (t-test)

From: Estimating genomic diversity and population differentiation – an empirical comparison of microsatellite and SNP variation in Arabidopsis halleri

Population Microsatellites SNPs  
A r SSR-H e F IS F IS p-values θ Watterson SNP-H e Tajima’s D Tajima’s D p-values
Aha09 2.7 0.392 0.073 0.051 0.0088 0.154 −0.029 <0.001
Aha11 2.6 0.318 0.043 0.217 0.0081 0.138 −0.114 <0.001
Aha18 2.6 0.360 −0.015 0.386 0.0086 0.152 −0.009 0.743
Aha19 2.8 0.332 −0.084 0.027 0.0086 0.150 −0.033 <0.001
Aha21 2.7 0.404 0.075 0.075 0.0083 0.148 −0.021 0.106
Aha31 3.1 0.387 0.068 0.082 0.0093 0.157 −0.119 <0.001
AhaN1 2.9 0.465 0.081 0.030 0.0092 0.155 −0.169 <0.001
AhaN3 3.1 0.399 0.110 0.010 0.0089 0.154 −0.151 <0.001
AhaN4 2.2 0.343 0.058 0.151 0.0067 0.119 −0.103 <0.001
Mean 2.7 0.378 0.045   0.0085 0.148 −0.083