Table 1 General features of the plasmids and ICEs found in Alteromonas genomes
From: Networking in microbes: conjugative elements and plasmids in the genus Alteromonas
CE | Size (bp) | %GC CE | %GC Chromosome | Coding Density (%) | #ORFs | #Hypothetical Protein | tRNAs | Mobility | Host | Origin | Depth(m) |
|---|---|---|---|---|---|---|---|---|---|---|---|
pAMCP49-600 | 610,127 | 42.9 | 45.0 | 87 | 611 | 462 | 13 | C | A. mediterranea CP49 | Mediterranean Sea | Surface |
pAMCP48-600 | 603,655 | 42.9 | 45.0 | 87 | 608 | 459 | 13 | C | A. mediterranea CP48 | Mediterranean Sea | Surface |
pAMDE1-300 | 303,282 | 41.4 | 44.9 | 89 | 316 | 203 | - | C | A. mediterranea DE1-UM7-U10-UM8-U4 | Adriatic Sea/Ionian Sea | 1,000/3,475 |
pAMRG65-300 | 302,350 | 38.7 | 44.9 | 86 | 362 | 100 | - | C | A. mediterranea RG65 | Mediterranean Sea | Surface |
pASTE61-200 | 252,173 | 41.4 | 44.4 | 88 | 243 | 116 | - | MB | A. stellipolaris LMG 21861 | Antarctic Sea | 25 |
pAMEC615-200 | 200,847 | 42.9 | 45.6 | 79 | 216 | 117 | - | C | A. mediterranea 615 | English Channel | 5 |
pAM1A3 | 148,934 | 42.3 | 44.8 | 78 | 209 | 95 | - | NMB | A. macleodii HOT1A3 | Pacific Ocean | 10 |
pAMAD6-100 | 105,403 | 40.3 | 44.6 | 60 | 94 | 46 | - | NMB | A. macleodii AD006 | Indic Ocean | 0.12 |
pAMAD37-85 | 85,188 | 41.1 | 44.7 | 61 | 89 | 46 | - | NMB | A. macleodii AD037 | Indic Ocean | 0.12 |
ICEAmaAS1 | 103,910 | 47.9 | 44.9 | 89 | 98 | 27 | - | C | A. mediterranea DE1-UM7-UM8-U10 | Adriatic Sea/Ionian Sea | 1,000/3,475 |
ICEAmaAS2 | 104,983 | 48.1 | 44.9 | 89 | 103 | 28 | - | C | A. mediterranea UM4b | Ionian Sea | 3,455 |
ICEAmaAgS1 | 101,205 | 46.0 | 44.8 | 91 | 98 | 39 | - | C | A. mediterranea MED64 | Aegean Sea | 5 |
ICEAmaAnS1 | 117,480 | 47.0 | 44.4 | 88 | 109 | 32 | - | C | A. macleodii D7 | Andaman Sea | Surface |
ICEAspMex1 | 86,518 | 46.0 | 44.2 | 91 | 73 | 29 | - | C | Alteromonas sp. Mex14 | Gulf of Mexico | Surface |
ICEAspBS1 | 121,528 | 47.3 | 44.4 | 88 | 112 | 32 | - | C | Alteromonas sp. RW2A1 | Baltic Sea | Surface |