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Table 1 Overview of included species for comparative genomics

From: Nicotiana attenuata Data Hub (NaDH): an integrative platform for exploring genomic, transcriptomic and metabolomic data in wild tobacco

Species

Version

# of genes

URL

Reference

N. attenuata

r2.0

33,449

http://nadh.ice.mpg.de/NaDH/download/

[7]

N. obtusifolia

r1.0

27,911

http://nadh.ice.mpg.de/NaDH/download/

[7]

A. thaliana

TAIR 10

27,416

http://phytozome.jgi.doe.gov/arabidopsis

[9, 10]

C. annuum

v2.0

35,336

http://peppersequence.genomics.cn/page/species/download.jsp

[11]

C. sativus

v1.0

21,503

http://phytozome.jgi.doe.gov/cucumber

[12]

M. guttatus

v2.0

28,140

http://phytozome.jgi.doe.gov/mimulus

[13]

P. trichocarpa

v3.0

41,335

http://phytozome.jgi.doe.gov/poplar

[14]

S. lycopersicum

ITAG2.3

34,727

http://phytozome.jgi.doe.gov/tomato

[15]

S. melongena

v2.5.1

42,035

ftp://ftp.kazusa.or.jp/pub/eggplant/

[16]

S. tuberosum

v3.4

35,119

http://phytozome.jgi.doe.gov/potato

[17]

V. vinifera

Genoscope.12X

26,346

http://phytozome.jgi.doe.gov/grape

[18]