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Table 1 Comparison of fold changes between RNAseq and qPCR

From: RNA sequencing for global gene expression associated with muscle growth in a single male modern broiler line compared to a foundational Barred Plymouth Rock chicken line

 

PeM vs. BPR

Gene symbol

RNAseq*

qPCR*

MYH15

9.2

5.1

TPM3

2.3

2.2

MYOZ2

5.9

4.4

TNNI1

5.7

24.7

MSTN

2.2

1.4

PLN**

13.8

−2.4

PPARGC1A

−2.2

−1.5

PPARGC1B

−2.3

−1.7

FABP4

6.5

5.0

CKMT1A

1.6

1.3

MB

10.9

10.3

LMOD2**

32.2

−1.1

CA3

30.3

4.6

NOXO1

18.1

1.2

MYBPC1

12.6

10.8

IL23R**

−13.4

1.2

GPM6A

−11.4

−1.7

PPDPF

−6.5

−5.3

ACE**

−6.0

1.1

CD9

−5.9

−4.5

  1. * Values denote linear fold changes
  2. ** Inconsistent fold change between RNAseq and qPCR were italicized
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BMC Genomics

ISSN: 1471-2164

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