Table 1 Summary of transcriptome sequencing for nine Allium species
Species | Abbr. | Crop names | Leaf shape | Clean read number (Million) | Transcriptome size (Mb) | Unigene number | Mean length of unigene (bp) | Gene number annotated |
|---|---|---|---|---|---|---|---|---|
A. sativum | SAT | Garlic | Flat solid leaf | 103.6 | 77.95 | 132,225 | 590 | 46341 (35.04%) |
A. porrum | POR | Leek | Flat solid leaf | 128.9 | 109.28 | 189,713 | 576 | 48621 (25.62%) |
A. tuberosum | TUB | Chinese chives | Flat solid leaf | 109.4 | 83.78 | 148,715 | 563 | 44532 (29.94%) |
A. macrostemon | MAC | Â | Fistular leaf with small gap | 99.9 | 85.48 | 161,681 | 529 | 52129 (32.24%) |
A. chinense | CHI | Chinese jiaotou | Triangular fistular leaf | 111.9 | 66.84 | 121,008 | 552 | 41908 (34.63%) |
A. ascalonicum | ASC | Shallot | Columnar fistular leaf | 100.8 | 71.62 | 117,659 | 609 | 40315 (34.26%) |
A. fistulosum | FIS | Welsh onion | Columnar fistular leaf | 121.0 | 76.56 | 128,372 | 596 | 42311 (32.95%) |
A. cepa L. var. cepa | CEP | Onion | Columnar fistular leaf | 102.9 | 74.03 | 117,189 | 632 | 39472 (33.68%) |
A. cepa var. agrogarum | AGR | Â | Columnar fistular leaf | 102.5 | 53.35 | 83,186 | 641 | 34141 (41.04%) |