Integration of VDR genome wide binding and GWAS genetic variation data reveals co-occurrence of VDR and NF-κB binding that is linked to immune phenotypes

Table 3 The distribution of Regulome DB scores for different SNP lists

Regulome DB score	(A)	(B)	(C)
Regulome DB score	No. of GWAS + LD SNPs (191482)	No. of (A) SNPs under VDR peaks (572)	No. of (B) SNPs under VDR peaks enriched for trait association (42)
1a	21	1	0
1b	272	15	1
1c	6	0	0
1d	148	3	0
1e	7	0	0
1f	3182	43	5
2a	369	34	2
2b	3182	109	7
2c	137	8	0
Total	7324	213	15

All the GWAS + LD SNPs were analyzed using RegulomeDB. The table shows the distribution of scores 1 and 2 SNPs under VDR peaks as well as for 42 significant trait associated SNPs

ISSN: 1471-2164