Skip to main content

Table 1 Subset of words from word vectors for three different genes

From: Revealing common disease mechanisms shared by tumors of different tissues of origin through semantic representation of genomic alterations and topic modeling

TP53 MDM2 TTN
Word Tf-Idf Word Tf-Idf Word Tf-Idf
p53 4,084 hdm2 629 ttn 88
tp53 4,084 mdm2 629 titin 88
cell 1,443 hdmx 629 domain 31
cancer 890 p53 363 pevk 18
express 887 cell 150 region 17
mutat 788 cancer 136 protein 16
activ 683 associ 117 muscl 15
gene 615 regul 113 mutat 15
associ 614 activ 97 structur 14
protein 602 express 95 elast 12
tumor 563 snp309 95 mechan 12
regul 505 protein 90 heart 11
carcinoma 465 risk 83 interact 11
role 456 suggest 76 molecular 11
apoptosi 418 result 74 express 10
result 405 tumor 73 stiff 10
function 397 polymorph 70 cardiomyopathi 10
pathwai 387 ubiquitin 69 studi 10
dna 384 interact 66 famili 10
suggest 371 degrad 66 sarcomer 10