Fig. 8
From: Improved annotation with de novo transcriptome assembly in four social amoeba species
Protein sequence for comp5787_c28_seq1 alignment with homologues from D. fasciculatum, D. purpureum and P. pallidum. a Jalview [45] multiple sequence alignment together with Jpred secondary structure prediction and its associated confidence, ‘JNETCONF’ [46]. Green arrows represent extended strands and red bars represent helical regions. In the alignment IBN_N (purple) and HEAT_EZ (red) domains are highlighted. b MrBayes [47] phylogenetic tree annotated with SMART [48] domain architectures determined. Each amino acid in the multiple alignment is coloured according to the clustalx [49] colour scheme