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Table 2 Comparison of transcript statistics at each stage of assembly

From: Improved annotation with de novo transcriptome assembly in four social amoeba species

 

Trinity

PASAaa

PASAua

Existing Modelsa

D. discoideum

 No. transcripts

31,259

19,920

11,523

12,283

 Mean length

871

782

1,787

1,685

 No. exons

392,850

32,389

26,905

27,293

 Mean exons/transcript

12.78

1.65

2.35

2.41

P. pallidum

 No. transcripts

35,631

21,230

12,849

11,440

 Mean length

1,338

1,231

1,822

1,635

 No. exons

94,636

45,582

37,906

33,179

 Mean exons/transcript

2.67

2.44

3.12

2.90

D. fasciculatum

 No. transcripts

46,779

21,574

12,714

11,879

 Mean length

1,212

1,357

1,951

1,696

 No. exons

88,425

43,406

39,021

36,789

 Mean exons/transcript

2.25

2.35

3.21

3.10

D. lacteum

 No. transcripts

38,508

18,045

11,315

10,232

 Mean length

1,671

1,871

1,964

1,712

 No. exons

75,249

27,430

22,396

20,682

 Mean exons/transcript

2.46

2.26

2.15

2.02

  1. aExisting models retrieved from DictyBase for D. discoideum and derived from Augustus predictions for P. pallidum, D. lacteum and D. fasciculatum