From: Improved annotation with de novo transcriptome assembly in four social amoeba species
Trinity | PASAaa | PASAua | Existing Modelsa | |
---|---|---|---|---|
D. discoideum | ||||
No. transcripts | 31,259 | 19,920 | 11,523 | 12,283 |
Mean length | 871 | 782 | 1,787 | 1,685 |
No. exons | 392,850 | 32,389 | 26,905 | 27,293 |
Mean exons/transcript | 12.78 | 1.65 | 2.35 | 2.41 |
P. pallidum | ||||
No. transcripts | 35,631 | 21,230 | 12,849 | 11,440 |
Mean length | 1,338 | 1,231 | 1,822 | 1,635 |
No. exons | 94,636 | 45,582 | 37,906 | 33,179 |
Mean exons/transcript | 2.67 | 2.44 | 3.12 | 2.90 |
D. fasciculatum | ||||
No. transcripts | 46,779 | 21,574 | 12,714 | 11,879 |
Mean length | 1,212 | 1,357 | 1,951 | 1,696 |
No. exons | 88,425 | 43,406 | 39,021 | 36,789 |
Mean exons/transcript | 2.25 | 2.35 | 3.21 | 3.10 |
D. lacteum | ||||
No. transcripts | 38,508 | 18,045 | 11,315 | 10,232 |
Mean length | 1,671 | 1,871 | 1,964 | 1,712 |
No. exons | 75,249 | 27,430 | 22,396 | 20,682 |
Mean exons/transcript | 2.46 | 2.26 | 2.15 | 2.02 |