Improved annotation with de novo transcriptome assembly in four social amoeba species

BMC Genomics

Table 5 Homology and functional information for novel transcripts in D. discoideum

Transcript ID	Length	Read Count	ORF Length	% Identity	Closest Sequence Match^a	Domain
comp1545_c0_seq1	1,035	560	345 aa	41	DFA_11908^b	XPGI
				29	DDB_G0284987^c	HhH2
				29	DICPUDRAFT_31355^d	Low complexity
comp4660_c0_seq1	592	41	198 aa	29	DDB_G0292950^c	Low complexity
comp4660_c0_seq1	592	41	198 aa	27	DDB_G0293040^c	Low complexity
comp4660_c4_seq1	650	36	217 aa	28	DDB_G0292950^c	Low complexity
comp5569_c2_seq1	1,891	692	631 aa	30	DDB_G0292950^c	Low complexity
				29	DDB_G0293040^c
				25	DDB_G0292936^c
				25	DDB_G0292934^c
comp5787_c28_seq1	2,554	1,658	831 aa	72	DICPUDRAFT_51827^d	IBN_N Pfam:HEAT_EZ Low complexity
				50	XP_004351151^b
				51	PPL_10069^e
comp5953_c11_seq1	882	425	294 aa	50	XP_004359777.1^b	AAA_11, AAA_12
comp5953_c48_seq1	844	293	281 aa	63	DICPUDRAFT_84867^d	AAA_11
				63	XP_004359777.1^b
				41	DFA_01811^b
comp6065_c2_seq1	556	209	169 aa	49	DICPUDRAFT_84867^d	Pfam:DUF2439 Low complexity
comp6065_c2_seq1	556	209	169 aa	41	DFA_01810^b	Pfam:DUF2439 Low complexity
comp2066_c1_seq1	580	212	193 aa	82	DICPUDRAFT_160104^d	Pfam:UAA
comp4678_c1_seq1	455	102	67 aa		No significant hit	No domain
comp470_c0_seq1	779	114	71 aa		No significant hit	Transmembrane region

ISSN: 1471-2164