Fig. 1
From: Identification and evolutionary analysis of long non-coding RNAs in zebra finch
Overview of the ssRNA-seq transcriptome assembly and lncRNA identification pipeline. a Overview of the ssRNA-seq-based transcript reconstruction pipeline that was used to identify expressed transcripts in sequencing libraries. b The integrative pipeline for the stringent identification of lncRNAs in zebra finch dorsal skins. CPC: coding potential calculator; PLEK: predictor of long non-coding RNAs and messenger RNAs based on an improved k-mer scheme; HMMER (HMMER-3): Profiling protein sequence data using hidden Markov models