Table 1 Statistics of alternative splicing (AS) events and genes in V. dahliae transcriptomes
| Â | AS type | V991w | V991b | All | Total | OL | Frequency | Genes | OL |
|---|---|---|---|---|---|---|---|---|---|
AS events involving one alternative splice site | |||||||||
| A3SS | 221/372 | 230/378 | 308/466 | 582 | 256 | 11.63% | 515 | 243 |
| A3SS&ES | 3/5 | 2/9 | 3/5 | 12 | 3 | 0.14% | 11 | 3 |
| A5SS | 150/221 | 139/232 | 211/294 | 379 | 163 | 7.40% | 357 | 161 |
| A5SS&ES | 6/11 | 4/9 | 9/12 | 15 | 7 | 0.32% | 13 | 7 |
| 5pMXE | 15/18 | 11/16 | 17/20 | 23 | 14 | 0.64% | 23 | 14 |
| 3pMXE | 1/2 | 0/2 | 1/2 | 2 | 1 | 0.05% | 2 | 1 |
| MXE | 2/1 | 1/0 | 3/1 | 3 | 1 | 0.05% | 3 | 1 |
| ES | 9/12 | 5/13 | 10/15 | 18 | 9 | 0.42% | 18 | 9 |
| Cassette Exon | 35/61 | 47/62 | 62/89 | 104 | 49 | 2.23% | 98 | 50 |
| Â | 1138 | 503 | 22.85% | 1040 | 489 | ||||
Intron retention | |||||||||
| IntronR | 1305/2560 | 1247/2568 | 1935/3236 | 4033 | 1558 | 70.79% | 2955 | 1339 |
AS events involving a pair of novel splice sites | |||||||||
| Cassette Intron | 64/207 | 62/223 | 106/299 | 325 | 100 | 4.54% | 318 | 100 |
| Intronic intron | 32/73 | 39/73 | 58/108 | 138 | 40 | 1.82% | 127 | 40 |
| Total | 1843/3543 | 1787/3577 | 2723/4547 | 5634 | 2201 | 100.00% | 4440 | 1968 |
