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Table 1 Statistics of alternative splicing (AS) events and genes in V. dahliae transcriptomes

From: Transcriptome analysis reveals the complexity of alternative splicing regulation in the fungus Verticillium dahliae

  AS type V991w V991b All Total OL Frequency Genes OL
AS events involving one alternative splice site
A3SS 221/372 230/378 308/466 582 256 11.63% 515 243
A3SS&ES 3/5 2/9 3/5 12 3 0.14% 11 3
A5SS 150/221 139/232 211/294 379 163 7.40% 357 161
A5SS&ES 6/11 4/9 9/12 15 7 0.32% 13 7
5pMXE 15/18 11/16 17/20 23 14 0.64% 23 14
3pMXE 1/2 0/2 1/2 2 1 0.05% 2 1
MXE 2/1 1/0 3/1 3 1 0.05% 3 1
ES 9/12 5/13 10/15 18 9 0.42% 18 9
Cassette Exon 35/61 47/62 62/89 104 49 2.23% 98 50
  1138 503 22.85% 1040 489
Intron retention
IntronR 1305/2560 1247/2568 1935/3236 4033 1558 70.79% 2955 1339
AS events involving a pair of novel splice sites
Cassette Intron 64/207 62/223 106/299 325 100 4.54% 318 100
Intronic intron 32/73 39/73 58/108 138 40 1.82% 127 40
Total 1843/3543 1787/3577 2723/4547 5634 2201 100.00% 4440 1968
  1. The results of both datasets were shown in pair, in the 1st/2nd format. The number of the events or genes overlapped (OL) between the datasets is indicated
  2. Three major types of non-IR as events were bolded