Table 1 Major characteristics of the 35 prophages carried by the 22 ST398 isolates studied
From: Prophages and adaptation of Staphylococcus aureus ST398 to the human clinic
Phage names | Cluster | Ac. N° of the host genome | Size (bp) | %G + C | Number of CDSs |
|---|---|---|---|---|---|
10–285 phi01 | φ3 | LNJH00000000 | 47′596 | 32.76 | 62 |
15–166 phi02 | φ3 | LXGQ00000000 | 47′598 | 32.76 | 64 |
14–296 phi01 | φ3 | LXGS00000000 | 47′598 | 32.76 | 64 |
12–148 phi01 | φ3 | LXGP00000000 | 47′595 | 32.76 | 64 |
10–234 phi01 | φ3 | LXGR00000000 | 76′003 | 31.38 | 93 |
10–386 4pro | φ3 | AUPV0100000 | 42′906 | 33.08 | 59 |
14–613 phi02 | φ3 | LNJN00000000 | 47′149 | 32.76 | 62 |
14–639 phi01 | φ3 | LNJO00000000 | 47′598 | 32.75 | 62 |
13–246 phi01 | φ3 | LNJK00000000 | 47′598 | 32.76 | 62 |
07–72 phi01 | φ3 | AUPW0100000 | 51′402 | 32.68 | 67 |
13–192 phi02 | φ3 | LNJF00000000 | 46′241 | 32.67 | 61 |
12–154 phi02 | φ3 | LNJJ00000000 | 31′531 | 31.90 | 41 |
14–118 phi01 | φ3 | LNJL00000000 | 47′581 | 32.75 | 62 |
11–192 phi01 | φ3 | LNJI00000000 | 48′616 | 32.71 | 65 |
10–17 phi02 | φ3 | LNJG00000000 | 71′567 | 32.01 | 69 |
14–613 phi01 | MR11-like | LNJN00000000 | 60′024 | 34.61 | 77 |
15–166 phi01 | MR11-like | LXGQ00000000 | 59′797 | 34.63 | 80 |
10–386 5pro | MR11-like | AUPV0100000 | 43′301 | 35.14 | 66 |
12–154 phi01 | MR11-like | LNJJ00000000 | 46′683 | 34.95 | 59 |
33972 phi01 | MR11-like | LNKX00000000 | 60′070 | 35.55 | 74 |
10–17 phi01 | MR11-like | LNJG00000000 | 69′195 | 34.16 | 83 |
14–265 phi02 | MR11-like | LNJM00000000 | 50′513 | 35.04 | 66 |
s130 phi02 | MR11-like | AUPT0100000 | 48′363 | 34.69 | 75 |
s1 3pro | MR11-like | AUPS0100000 | 41′392 | 35.60 | 67 |
33924 phi01 | MR11-like | LNKW00000000 | 42′831 | 35.53 | 69 |
s0385 phi01 | Others | NC_017333 | 48′968 | 33.73 | 68 |
s03985 phi02 | Others | NC_017333 | 72′587 | 33.13 | 75 |
s1 2pro | Others | AUPS0100000 | 45′572 | 33.34 | 61 |
s130 phi01 | Others | AUPT0100000 | 48′456 | 33.69 | 64 |
33972 phi02 | Others | LNKX00000000 | 72′917 | 33.1 | 72 |
33924 phi02 | Others | LNKW00000000 | 61′369 | 33.66 | 100 |
33924 phi03 | Others | LNKW00000000 | 36′575 | 33.48 | 59 |
14–265 phi01 | Others | LNJM00000000 | 48′081 | 33.96 | 65 |
12–154 phi03 | Others | LNJJ00000000 | 56′681 | 34.15 | 76 |
13–192 phi01 | Others | LNJF00000000 | 42′303 | 34.30 | 62 |