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Table 3 Significant (p-value < 0.01) gene ontology enrichment of the categories built from their variant contents and downstream coding-effect

From: Landscape of genomic diversity and host adaptation in Fusarium graminearum

Genes Lists GO ID GO Term Genes in the GO list Theoretical gene number Observed gene number Fold enrichment
"Non-functional" GO:0006030 chitin metabolic process 21 1 5 4.9
"Modified Protein" GO:0006355 regulation of transcription, DNA-dependent 458 239 294 1.2
GO:0055114 oxidation-reduction process 763 398 478 1.2
GO:0060255 regulation of macromolecule metabolic process 482 250 300 1.2
GO:0080090 regulation of primary metabolic process 497 258 307 1.2
“Conserved protein” GO:0044262 cellular carbohydrate metabolic process 30 8 17 2.2
GO:0007264 small GTPase mediated signal transduction 43 11 22 2.0
GO:0015031 protein transport 121 31 59 1.9
GO:0044723 single-organism carbohydrate metabolic process 82 21 36 1.7
GO:0072521 purine-containing compound metabolic process 90 23 38 1.6
GO:0006412 translation 181 47 76 1.6
GO:0007154 cell communication 140 36 56 1.5
GO:0044267 cellular protein metabolic process 509 132 179 1.4
"Highly conserved genes" GO:0006888 ER to Golgi vesicle-mediated transport 8 1 6 4.5
GO:0048193 Golgi vesicle transport 15 3 10 4.0
GO:0016482 cytoplasmic transport 26 4 12 2.8
GO:0034622 cellular macromolecular complex assembly 25 4 11 2.6
GO:0006457 protein folding 40 7 16 2.4
GO:0022607 cellular component assembly 35 6 14 2.4
GO:0044283 small molecule biosynthetic process 132 22 46 2.1
GO:1901136 carbohydrate derivative catabolic process 53 9 18 2.0
GO:0046394 carboxylic acid biosynthetic process 110 18 37 2.0
GO:0006996 organelle organization 66 11 22 2.0
GO:0006412 translation 181 30 59 1.9
GO:0008652 cellular amino acid biosynthetic process 86 14 27 1.9
GO:1901565 organonitrogen compound catabolic process 75 13 23 1.8
GO:0071840 cellular component organization or biogenesis 134 22 39 1.7
GO:1901566 organonitrogen compound biosynthetic process 190 32 54 1.7
GO:0044267 cellular protein metabolic process 509 85 128 1.5
GO:0044281 small molecule metabolic process 463 77 110 1.4
GO:1901564 organonitrogen compound metabolic process 400 67 95 1.4
GO:0044249 cellular biosynthetic process 788 132 174 1.3
GO:0019538 protein metabolic process 680 114 141 1.2