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Table 3 Significant (p-value < 0.01) gene ontology enrichment of the categories built from their variant contents and downstream coding-effect

From: Landscape of genomic diversity and host adaptation in Fusarium graminearum

Genes Lists

GO ID

GO Term

Genes in the GO list

Theoretical gene number

Observed gene number

Fold enrichment

"Non-functional"

GO:0006030

chitin metabolic process

21

1

5

4.9

"Modified Protein"

GO:0006355

regulation of transcription, DNA-dependent

458

239

294

1.2

GO:0055114

oxidation-reduction process

763

398

478

1.2

GO:0060255

regulation of macromolecule metabolic process

482

250

300

1.2

GO:0080090

regulation of primary metabolic process

497

258

307

1.2

“Conserved protein”

GO:0044262

cellular carbohydrate metabolic process

30

8

17

2.2

GO:0007264

small GTPase mediated signal transduction

43

11

22

2.0

GO:0015031

protein transport

121

31

59

1.9

GO:0044723

single-organism carbohydrate metabolic process

82

21

36

1.7

GO:0072521

purine-containing compound metabolic process

90

23

38

1.6

GO:0006412

translation

181

47

76

1.6

GO:0007154

cell communication

140

36

56

1.5

GO:0044267

cellular protein metabolic process

509

132

179

1.4

"Highly conserved genes"

GO:0006888

ER to Golgi vesicle-mediated transport

8

1

6

4.5

GO:0048193

Golgi vesicle transport

15

3

10

4.0

GO:0016482

cytoplasmic transport

26

4

12

2.8

GO:0034622

cellular macromolecular complex assembly

25

4

11

2.6

GO:0006457

protein folding

40

7

16

2.4

GO:0022607

cellular component assembly

35

6

14

2.4

GO:0044283

small molecule biosynthetic process

132

22

46

2.1

GO:1901136

carbohydrate derivative catabolic process

53

9

18

2.0

GO:0046394

carboxylic acid biosynthetic process

110

18

37

2.0

GO:0006996

organelle organization

66

11

22

2.0

GO:0006412

translation

181

30

59

1.9

GO:0008652

cellular amino acid biosynthetic process

86

14

27

1.9

GO:1901565

organonitrogen compound catabolic process

75

13

23

1.8

GO:0071840

cellular component organization or biogenesis

134

22

39

1.7

GO:1901566

organonitrogen compound biosynthetic process

190

32

54

1.7

GO:0044267

cellular protein metabolic process

509

85

128

1.5

GO:0044281

small molecule metabolic process

463

77

110

1.4

GO:1901564

organonitrogen compound metabolic process

400

67

95

1.4

GO:0044249

cellular biosynthetic process

788

132

174

1.3

GO:0019538

protein metabolic process

680

114

141

1.2