Table 2 MiRNA targets validated by degradome sequencinga
From: Response of microRNAs to cold treatment in the young spikes of common wheat
miRNA Classification | miRNA families | Target verified by the Degradome tags |
|---|---|---|
Conserved in plants | miR156 | Squamosa promoter-binding-like protein (SPB) |
miR159 | myb domain protein (MYB) | |
Disease resistance protein | ||
miR160 | auxin response factor (ARF) | |
miR166 | Homeobox-leucine zipper protein HOX9 (START domain) | |
miR167 | Auxin response factor (ARF) | |
miR168 | Argonaute family protein (AGO) | |
miR169 | Nuclear transcription factor Y subunit A (NTFYA) | |
miR172 | AP2-like ethylene-responsive transcription factor (AP2) | |
miR2118 | Emsy N Terminus (ENT)/plant Tudor-like domains-containing protein (EMSY N-terminal) | |
miR2275 | Cathepsin B-like cysteine proteinase | |
miR3057 | subtilisin-like serine protease 2 LENGTH = 764 | |
miR3062 | Mitochondrial transcription termination factor family protein LENGTH = 390 | |
miR3084 | Disease resistance protein | |
miR319 | TCP family transcription factor (TCP) | |
miR393 | Transport inhibitor response 1-like protein | |
miR394 | F-box family protein (F-box) | |
miR396 | Growth-regulating factor (GRF) | |
Grass-specific | miR1122 | fructose-bisphosphate aldolase 2 LENGTH = 398 |
miR444 | Regulator of chromosome condensation (RCC1) family | |
RING finger protein 5 | ||
miR5048 | receptor kinase 3 LENGTH = 850 | |
miR5049 | Pre-mRNA-processing-splicing factor LENGTH = 2359 | |
miR5062 | Ubiquitin carboxyl-terminal hydrolase | |
Argonaute family protein (AGO) | ||
Elongation factor 1-beta | ||
miR5071 | Disease resistance protein | |
Triticum-specific | miR5168 | Homeobox-leucine zipper protein (START domain) |
miR5048 | receptor kinase 3 | |
miR9674 | Pentatricopeptide repeat (PPR) | |
miR9772 | UPI000234FD81 related cluster | |
miR9863 | Disease resistance protein | |
Wheat-specific | miR9662 | Mitochondrial transcription termination factor family protein |
miR9676 | alpha/beta-Hydrolases superfamily protein | |
miR9679 | Elongation factor 1-gamma |