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Table 4 Some examples of SNPs identified from the aquaculture species under NRSP-8

From: Aquaculture genomics, genetics and breeding in the United States: current status, challenges, and priorities for future research

Species SNPs from genome sequencing Numbers of SNPs Method of identification Reference
Catfish None 8.3 million Genome re-sequencing, transcriptome sequencing Sun et al. 2014 [18]
Liu et al. 2012 [158]
Rainbow trout None 145,168 RAD sequencing Palti et al. 2014 [159]
5052 RNA-Seq Christensen et al. 2013 [160], Al-Tobasei et al. 2016 [161]
50,000 RNA-Seq Palti et al. 2015 [23]
1.8 million Genome re-sequencing
Atlantic salmon None 9.7 million Genome re-sequencing Yáñez et al. 2016 [19]
Tilapia Yes 3569 Genome re-sequencing Van Bers et al. 2012 [162]
Striped bass Yes - RNA-Seq Li et al. 2014 [163]
Pacific oyster Yes 3.8 million Genome re-sequencing Zhang et al., 2012 [9]
4122 RNA-Seq Hedgecock et al. 2015 [14]
Pacific white shrimp Yes 96,040 RNA-Seq Yu et al. 2014 [164]
  1. Those SNPs identified from genome sequencing are not included here