Aquaculture genomics, genetics and breeding in the United States: current status, challenges, and priorities for future research

Table 4 Some examples of SNPs identified from the aquaculture species under NRSP-8

Species	SNPs from genome sequencing	Numbers of SNPs	Method of identification	Reference
Catfish	None	8.3 million	Genome re-sequencing, transcriptome sequencing	Sun et al. 2014 [18]
Catfish	None	8.3 million	Genome re-sequencing, transcriptome sequencing	Liu et al. 2012 [158]
Rainbow trout	None	145,168	RAD sequencing	Palti et al. 2014 [159]
		5052	RNA-Seq	Christensen et al. 2013 [160], Al-Tobasei et al. 2016 [161]
		50,000	RNA-Seq	Palti et al. 2015 [23]
		1.8 million	Genome re-sequencing	Palti et al. 2015 [23]
Atlantic salmon	None	9.7 million	Genome re-sequencing	Yáñez et al. 2016 [19]
Tilapia	Yes	3569	Genome re-sequencing	Van Bers et al. 2012 [162]
Striped bass	Yes	-	RNA-Seq	Li et al. 2014 [163]
Pacific oyster	Yes	3.8 million	Genome re-sequencing	Zhang et al., 2012 [9]
Pacific oyster	Yes	4122	RNA-Seq	Hedgecock et al. 2015 [14]
Pacific white shrimp	Yes	96,040	RNA-Seq	Yu et al. 2014 [164]

ISSN: 1471-2164