Table 6 Examples of genetic linkage maps in aquaculture species, with the species under the NRSP-8 in bold
Species | Number and type of markers | Mapping population | Unique map positions | References |
|---|---|---|---|---|
Asian seabass | 790 microsatellites and SNPs | 93 fish from two families | 501 | Wang et al. 2011 [165] |
Atlantic salmon | 5650 SNPs | 3297 fish from 143 families | 2894 in female genetic map, 1009 in male specific map | Lien et al. 2011 [166] |
Brown trout | 288 microsatellites, 13 allozymes | 93 fish from 4 families | - | Gharbi et al. 2006 [167] |
Catfish | 54,342 SNPs | 576 fish from three channel catfish families | 15,598 | Li et al. 2015 [168] |
26,239 SNPs | 288 interspecific backcross progenies | 12,776 | Liu et al. 2016 [169] | |
253,087 SNPs | 465 fish from four channel catfish families | 30,591 | Zeng et al. 2017 [13] | |
Common carp | 28,194 SNPs | 108 fish from one yellow river carp family | 14,146 | Peng et al. 2016 [170] |
Eastern oyster | 4607 SNPs | 112 progenies from one family | 4136 | Guo, personal communication |
European seabass | 190 microsatellites, 176 AFLP, 2 SNP | 50 fish from one Venezia Fbis family | - | Chistiakov et al. 2008 [171] |
Grass carp | 279 microsatellites and SNPs | 192 progenies from two families | 245 | Xia et al. 2010 [172] |
Japanese flounder | 1268 microsatellites, 105 SNPs, 2 genes | 45 offspring from one family | 235 in male genetic map, 184 in female genetic map | Castaño-Sánchez et al. 2010 [173] |
Pacific oyster | 1172 SNPs and microsatellites | 336 progenies from five families | 1172 unique markers mapped | Hedgecock et al. 2015 [14] |
424 in consensus linkage map | ||||
Rainbow trout | 2226 microsatellites and SNPs | 120 individuals from two unrelated doubled haploid lines | 1366 in synthetic map | Guyomard et al. 2012 [174] |
47,939 SNPs | 5716 fish | 47,939 mapped to genome sequence scaffolds | Gonzalez-Pena et al. 2016 [26]; Palti personal communication | |
Scallop | 3806 SNPs | 96 progenies from one Farrer’s scallop family | 2983 | Jiao et al. 2013 [175] |
Sea bream | 321 microsatellites, ESTs, and SNPs | 50 individuals from one family | 229 | Tsigenopoulos et al. 2014 [176] |
Giant tiger prawn | 3959 SNPs | 1024 offspring from seven black tiger shrimp family | - | Baranski et al. 2014 [177] |
Pacific white shrimp | 429 AFLP, 22 microsatellites | F2 cross of slow and fast growth parents, 43 shrimp | - | Andriantahina et al. 2013 [178] |
6146 SNPs | 205 progenies from one Pacific white shrimp family | 4650 | Yu et al. 2015 [179] | |
Tilapia | 525 microsatellites, 20 genes | 70 individuals from one family | 435 | Lee et al. 2005 [180] |
401 microsatellites | 95 individuals from two families | 352 | Liu et al. 2013 [181] | |
Yellowtail | 217 microsatellites | 90 progenies from one family | 105 in female genetic map, 83 in male genetic map | Ohara et al. 2005 [182] |
1480 microsatellites and 601 SNPs | 94 offspring of one family | - | Aoki et al. 2015 [183] | |
6275 SNPs | 460 individuals from five wild families | - | Ozaki et al. 2016 [184] |