TY - BOOK PY - 2014 DA - 2014// TI - The Health Consequences of Smoking—50 Years of Progress PB - U.S. DHHS, Centers for Disease Control and Prevention, Office on Smoking and Health CY - Atlanta ID - ref1 ER - TY - BOOK PY - 2010 DA - 2010// TI - How Tobacco Smoke Causes Disease: The Biology and Behavioral Basis for Smoking-Attributable Disease. A Report of the Surgeon General PB - Centers for Disease Control and Prevention. Office on Smoking and Health CY - Atlanta ID - ref2 ER - TY - JOUR AU - Spira, A. AU - Beane, J. AU - Shah, V. AU - Liu, G. AU - Schembri, F. AU - Yang, X. AU - Palma, J. AU - Brody, J. S. PY - 2004 DA - 2004// TI - Effects of cigarette smoke on the human airway epithelial cell transcriptome JO - Proc Natl Acad Sci U S A VL - 101 UR - https://doi.org/10.1073/pnas.0401422101 DO - 10.1073/pnas.0401422101 ID - Spira2004 ER - TY - JOUR AU - Sridhar, S. AU - Schembri, F. AU - Zeskind, J. AU - Shah, V. AU - Gustafson, A. M. AU - Steiling, K. AU - Liu, G. AU - Dumas, Y. -. M. AU - Zhang, X. AU - Brody, J. S. PY - 2008 DA - 2008// TI - Smoking-induced gene expression changes in the bronchial airway are reflected in nasal and buccal epithelium JO - BMC Genomics VL - 9 UR - https://doi.org/10.1186/1471-2164-9-259 DO - 10.1186/1471-2164-9-259 ID - Sridhar2008 ER - TY - JOUR AU - Beineke, P. AU - Fitch, K. AU - Tao, H. AU - Elashoff, M. R. AU - Rosenberg, S. AU - Kraus, W. E. AU - Wingrove, J. A. PY - 2012 DA - 2012// TI - A whole blood gene expression-based signature for smoking status JO - BMC Med Genomics VL - 5 UR - https://doi.org/10.1186/1755-8794-5-58 DO - 10.1186/1755-8794-5-58 ID - Beineke2012 ER - TY - JOUR AU - Weng, D. Y. AU - Chen, J. AU - Taslim, C. AU - Hsu, P. C. AU - Marian, C. AU - David, S. P. AU - Loffredo, C. A. AU - Shields, P. G. PY - 2016 DA - 2016// TI - Persistent alterations of gene expression profiling of human peripheral blood mononuclear cells from smokers JO - Mol Carcinog VL - 55 UR - https://doi.org/10.1002/mc.22385 DO - 10.1002/mc.22385 ID - Weng2016 ER - TY - JOUR AU - Na, H. K. AU - Kim, M. AU - Chang, S. S. AU - Kim, S. Y. AU - Park, J. Y. AU - Chung, M. W. AU - Yang, M. PY - 2015 DA - 2015// TI - Tobacco smoking-response genes in blood and buccal cells JO - Toxicol Lett VL - 232 UR - https://doi.org/10.1016/j.toxlet.2014.10.005 DO - 10.1016/j.toxlet.2014.10.005 ID - Na2015 ER - TY - JOUR AU - Gower, A. C. AU - Steiling, K. AU - Brothers, J. F. AU - Lenburg, M. E. AU - Spira, A. PY - 2011 DA - 2011// TI - Transcriptomic studies of the airway field of injury associated with smoking-related lung disease JO - Proc Am Thorac Soc VL - 8 UR - https://doi.org/10.1513/pats.201011-066MS DO - 10.1513/pats.201011-066MS ID - Gower2011 ER - TY - JOUR AU - Piano, M. R. AU - Benowitz, N. L. AU - Fitzgerald, G. A. AU - Corbridge, S. AU - Heath, J. AU - Hahn, E. AU - Pechacek, T. F. AU - Howard, G. PY - 2010 DA - 2010// TI - Impact of smokeless tobacco products on cardiovascular disease: implications for policy, prevention, and treatment: a policy statement from the American Heart Association JO - Circulation VL - 122 UR - https://doi.org/10.1161/CIR.0b013e3181f432c3 DO - 10.1161/CIR.0b013e3181f432c3 ID - Piano2010 ER - TY - JOUR AU - Borgerding, M. F. AU - Bodnar, J. A. AU - Curtin, G. M. AU - Swauger, J. E. PY - 2012 DA - 2012// TI - The chemical composition of smokeless tobacco: a survey of products sold in the United States in 2006 and 2007 JO - Regul Toxicol Pharmacol VL - 64 UR - https://doi.org/10.1016/j.yrtph.2012.09.003 DO - 10.1016/j.yrtph.2012.09.003 ID - Borgerding2012 ER - TY - JOUR AU - Yatsuya, H. AU - Folsom, A. R. PY - 2010 DA - 2010// TI - Risk of incident cardiovascular disease among users of smokeless tobacco in the Atherosclerosis Risk in Communities (ARIC) study JO - Am J Epidemiol VL - 172 UR - https://doi.org/10.1093/aje/kwq191 DO - 10.1093/aje/kwq191 ID - Yatsuya2010 ER - TY - JOUR AU - Henley, S. J. AU - Thun, M. J. AU - Connell, C. AU - Calle, E. E. PY - 2005 DA - 2005// TI - Two large prospective studies of mortality among men who use snuff or chewing tobacco (United States) JO - Cancer Causes Control VL - 16 UR - https://doi.org/10.1007/s10552-004-5519-6 DO - 10.1007/s10552-004-5519-6 ID - Henley2005 ER - TY - JOUR AU - Thun, M. J. AU - Apicella, L. F. AU - Henley, S. J. PY - 2000 DA - 2000// TI - Smoking vs other risk factors as the cause of smoking-attributable deaths: confounding in the courtroom JO - JAMA VL - 284 UR - https://doi.org/10.1001/jama.284.6.706 DO - 10.1001/jama.284.6.706 ID - Thun2000 ER - TY - STD TI - U.S. Department of Health and Human Services. Reducing the Health Cunsequences of Smoking: 25 Years of Progress. A Report of the Surgeon General. U.S. Department of Health and Human Services, Public Health Service, Centers for Disease Control, Center for Chronic Disease Prevention and Health Promotion, Office on Smoking and Health. DHHS Publication No. (CDC) 89-8411. 1989. ID - ref14 ER - TY - JOUR AU - Hatsukami, D. K. AU - Joseph, A. M. AU - Lesage, M. AU - Jensen, J. AU - Murphy, S. E. AU - Pentel, P. R. AU - Kotlyar, M. AU - Borgida, E. AU - Le, C. AU - Hecht, S. S. PY - 2007 DA - 2007// TI - Developing the science base for reducing tobacco harm JO - Nicotine Tob Res VL - 9 UR - https://doi.org/10.1080/14622200701679040 DO - 10.1080/14622200701679040 ID - Hatsukami2007 ER - TY - JOUR AU - Zeller, M. AU - Hatsukami, D. PY - 2009 DA - 2009// TI - The Strategic Dialogue on Tobacco Harm Reduction: a vision and blueprint for action in the US JO - Tob Control VL - 18 UR - https://doi.org/10.1136/tc.2008.027318 DO - 10.1136/tc.2008.027318 ID - Zeller2009 ER - TY - JOUR AU - Nutt, D. J. AU - Phillips, L. D. AU - Balfour, D. AU - Curran, H. V. AU - Dockrell, M. AU - Foulds, J. AU - Fagerstrom, K. AU - Letlape, K. AU - Milton, A. AU - Polosa, R. PY - 2014 DA - 2014// TI - Estimating the harms of nicotine-containing products using the MCDA approach JO - Eur Addict Res VL - 20 UR - https://doi.org/10.1159/000360220 DO - 10.1159/000360220 ID - Nutt2014 ER - TY - JOUR AU - Foulds, J. AU - Ramstrom, L. AU - Burke, M. AU - Fagerstrom, K. PY - 2003 DA - 2003// TI - Effect of smokeless tobacco (snus) on smoking and public health in Sweden JO - Tob Control VL - 12 UR - https://doi.org/10.1136/tc.12.4.349 DO - 10.1136/tc.12.4.349 ID - Foulds2003 ER - TY - JOUR AU - Lee, P. N. PY - 2013 DA - 2013// TI - Epidemiological evidence relating snus to health—an updated review based on recent publications JO - Harm reduct J VL - 10 UR - https://doi.org/10.1186/1477-7517-10-36 DO - 10.1186/1477-7517-10-36 ID - Lee2013 ER - TY - JOUR AU - Campbell, L. R. AU - Brown, B. G. AU - Jones, B. A. AU - Marano, K. M. AU - Borgerding, M. F. PY - 2015 DA - 2015// TI - Study of cardiovascular disease biomarkers among tobacco consumers, part 1: biomarkers of exposure JO - Inhal Toxicol VL - 27 UR - https://doi.org/10.3109/08958378.2015.1013228 DO - 10.3109/08958378.2015.1013228 ID - Campbell2015 ER - TY - JOUR AU - Marano, K. M. AU - Kathman, S. J. AU - Jones, B. A. AU - Nordskog, B. K. AU - Brown, B. G. AU - Borgerding, M. F. PY - 2015 DA - 2015// TI - Study of cardiovascular disease biomarkers among tobacco consumers. Part 3: evaluation and comparison with the US National Health and Nutrition Examination Survey JO - Inhal Toxicol VL - 27 UR - https://doi.org/10.3109/08958378.2015.1009196 DO - 10.3109/08958378.2015.1009196 ID - Marano2015 ER - TY - JOUR AU - Nordskog, B. K. AU - Brown, B. G. AU - Marano, K. M. AU - Campell, L. R. AU - Jones, B. A. AU - Borgerding, M. F. PY - 2015 DA - 2015// TI - Study of cardiovascular disease biomarkers among tobacco consumers, part 2: biomarkers of biological effect JO - Inhal Toxicol VL - 27 UR - https://doi.org/10.3109/08958378.2015.1013227 DO - 10.3109/08958378.2015.1013227 ID - Nordskog2015 ER - TY - JOUR AU - Prasad, G. L. AU - Jones, B. A. AU - Chen, P. AU - Gregg, E. O. PY - 2016 DA - 2016// TI - A cross-sectional study of biomarkers of exposure and effect in smokers and moist snuff consumers JO - Clin Chem Lab Med VL - 54 UR - https://doi.org/10.1515/cclm-2015-0594 DO - 10.1515/cclm-2015-0594 ID - Prasad2016 ER - TY - STD TI - Prasad GL, Schmidt E, Chen P, Kennedy AD. Global metabolomic profiles reveal differences in oxidative stress and inflammation pathways in smokers and moist snuff consumers. J Metabolomics. 2015;1. http://dx.doi.org/10.7243/2059-0008-1-2. UR - http://dx.doi.org/10.7243/2059-0008-1-2 ID - ref24 ER - TY - JOUR AU - Arimilli, S. AU - Damratoski, B. E. AU - Chen, P. AU - Jones, B. A. AU - Prasad, G. L. PY - 2012 DA - 2012// TI - Rapid isolation of leukocyte subsets from fresh and cryopreserved peripheral blood mononuclear cells in clinical research JO - Cryo Letters VL - 33 ID - Arimilli2012 ER - TY - JOUR AU - Gentleman, R. C. AU - Carey, V. J. AU - Bates, D. M. AU - Bolstad, B. AU - Dettling, M. AU - Dudoit, S. AU - Ellis, B. AU - Gautier, L. AU - Ge, Y. AU - Gentry, J. PY - 2004 DA - 2004// TI - Bioconductor: open software development for computational biology and bioinformatics JO - Genome Biol VL - 5 UR - https://doi.org/10.1186/gb-2004-5-10-r80 DO - 10.1186/gb-2004-5-10-r80 ID - Gentleman2004 ER - TY - JOUR AU - Storey, J. D. AU - Tibshirani, R. PY - 2003 DA - 2003// TI - Statistical significance for genomewide studies JO - Proc Natl Acad Sci U S A VL - 100 UR - https://doi.org/10.1073/pnas.1530509100 DO - 10.1073/pnas.1530509100 ID - Storey2003 ER - TY - JOUR AU - Martin, F. AU - Talikka, M. AU - Hoeng, J. AU - Peitsch, M. C. PY - 2015 DA - 2015// TI - Identification of gene expression signature for cigarette smoke exposure response—from man to mouse JO - Hum Exp Toxicol VL - 34 UR - https://doi.org/10.1177/0960327115600364 DO - 10.1177/0960327115600364 ID - Martin2015 ER - TY - JOUR AU - Dogan, M. V. AU - Shields, B. AU - Cutrona, C. AU - Gao, L. AU - Gibbons, F. X. AU - Simons, R. AU - Monick, M. AU - Brody, G. H. AU - Tan, K. AU - Beach, S. R. PY - 2014 DA - 2014// TI - The effect of smoking on DNA methylation of peripheral blood mononuclear cells from African American women JO - BMC Genomics VL - 15 UR - https://doi.org/10.1186/1471-2164-15-151 DO - 10.1186/1471-2164-15-151 ID - Dogan2014 ER - TY - JOUR AU - Wan, E. S. AU - Qiu, W. AU - Baccarelli, A. AU - Carey, V. J. AU - Bacherman, H. AU - Rennard, S. I. AU - Agusti, A. AU - Anderson, W. AU - Lomas, D. A. AU - Demeo, D. L. PY - 2012 DA - 2012// TI - Cigarette smoking behaviors and time since quitting are associated with differential DNA methylation across the human genome JO - Hum Mol Genet VL - 21 UR - https://doi.org/10.1093/hmg/dds135 DO - 10.1093/hmg/dds135 ID - Wan2012 ER - TY - JOUR AU - Koks, G. AU - Uudelepp, M. L. AU - Limbach, M. AU - Peterson, P. AU - Reimann, E. AU - Koks, S. PY - 2015 DA - 2015// TI - Smoking-induced expression of the GPR15 gene indicates its potential role in chronic inflammatory pathologies JO - Am J Pathol VL - 185 UR - https://doi.org/10.1016/j.ajpath.2015.07.006 DO - 10.1016/j.ajpath.2015.07.006 ID - Koks2015 ER - TY - JOUR AU - Obeidat, M. AU - Ding, X. AU - Fishbane, N. AU - Hollander, Z. AU - Ng, R. T. AU - McManus, B. AU - Tebbutt, S. J. AU - Miller, B. E. AU - Rennard, S. AU - Pare, P. D. PY - 2016 DA - 2016// TI - The effect of different case definitions of current smoking on the discovery of smoking-related blood gene expression signatures in chronic obstructive pulmonary disease JO - Nicotine Tob Res VL - 18 UR - https://doi.org/10.1093/ntr/ntw129 DO - 10.1093/ntr/ntw129 ID - Obeidat2016 ER - TY - JOUR AU - Guida, F. AU - Sandanger, T. M. AU - Castagne, R. AU - Campanella, G. AU - Polidoro, S. AU - Palli, D. AU - Krogh, V. AU - Tumino, R. AU - Sacerdote, C. AU - Panico, S. PY - 2015 DA - 2015// TI - Dynamics of smoking-induced genome-wide methylation changes with time since smoking cessation JO - Hum Mol Genet VL - 24 UR - https://doi.org/10.1093/hmg/ddu751 DO - 10.1093/hmg/ddu751 ID - Guida2015 ER - TY - JOUR AU - Weidmann, H. AU - Touat-Hamici, Z. AU - Durand, H. AU - Mueller, C. AU - Chardonnet, S. AU - Pionneau, C. AU - Charlotte, F. AU - Janssen, K. P. AU - Verdugo, R. AU - Cambien, F. PY - 2015 DA - 2015// TI - SASH1, a new potential link between smoking and atherosclerosis JO - Atherosclerosis VL - 242 UR - https://doi.org/10.1016/j.atherosclerosis.2015.08.013 DO - 10.1016/j.atherosclerosis.2015.08.013 ID - Weidmann2015 ER - TY - JOUR AU - Martini, M. AU - Gnann, A. AU - Scheikl, D. AU - Holzmann, B. AU - Janssen, K. P. PY - 2011 DA - 2011// TI - The candidate tumor suppressor SASH1 interacts with the actin cytoskeleton and stimulates cell-matrix adhesion JO - Int J Biochem Cell Biol VL - 43 UR - https://doi.org/10.1016/j.biocel.2011.07.012 DO - 10.1016/j.biocel.2011.07.012 ID - Martini2011 ER - TY - JOUR AU - Tsaprouni, L. G. AU - Yang, T. P. AU - Bell, J. AU - Dick, K. J. AU - Kanoni, S. AU - Nisbet, J. AU - Vinuela, A. AU - Grundberg, E. AU - Nelson, C. P. AU - Meduri, E. PY - 2014 DA - 2014// TI - Cigarette smoking reduces DNA methylation levels at multiple genomic loci but the effect is partially reversible upon cessation JO - Epigenetics VL - 9 UR - https://doi.org/10.4161/15592294.2014.969637 DO - 10.4161/15592294.2014.969637 ID - Tsaprouni2014 ER - TY - JOUR AU - Chan, H. S. AU - Chang, S. J. AU - Wang, T. Y. AU - Ko, H. J. AU - Lin, Y. C. AU - Lin, K. T. AU - Chang, K. M. AU - Chuang, Y. J. PY - 2012 DA - 2012// TI - Serine protease PRSS23 is upregulated by estrogen receptor alpha and associated with proliferation of breast cancer cells JO - PLoS One VL - 7 UR - https://doi.org/10.1371/journal.pone.0030397 DO - 10.1371/journal.pone.0030397 ID - Chan2012 ER - TY - JOUR AU - Beane, J. AU - Vick, J. AU - Schembri, F. AU - Anderlind, C. AU - Gower, A. AU - Campbell, J. AU - Luo, L. AU - Zhang, X. H. AU - Xiao, J. AU - Alekseyev, Y. O. PY - 2011 DA - 2011// TI - Characterizing the impact of smoking and lung cancer on the airway transcriptome using RNA-Seq JO - Cancer Prev Res (Phila Pa) VL - 4 UR - https://doi.org/10.1158/1940-6207.CAPR-11-0212 DO - 10.1158/1940-6207.CAPR-11-0212 ID - Beane2011 ER - TY - JOUR AU - Beane, J. AU - Cheng, L. AU - Soldi, R. AU - Zhang, X. AU - Liu, G. AU - Anderlind, C. AU - Lenburg, M. E. AU - Spira, A. AU - Bild, A. H. PY - 2012 DA - 2012// TI - SIRT1 pathway dysregulation in the smoke-exposed airway epithelium and lung tumor tissue JO - Cancer Res VL - 72 UR - https://doi.org/10.1158/0008-5472.CAN-12-1043 DO - 10.1158/0008-5472.CAN-12-1043 ID - Beane2012 ER - TY - JOUR AU - Boyle, J. O. AU - Gumus, Z. H. AU - Kacker, A. AU - Choksi, V. L. AU - Bocker, J. M. AU - Zhou, X. K. AU - Yantiss, R. K. AU - Hughes, D. B. AU - Du, B. AU - Judson, B. L. PY - 2010 DA - 2010// TI - Effects of cigarette smoke on the human oral mucosal transcriptome JO - Cancer Prev Res (Phila Pa) VL - 3 UR - https://doi.org/10.1158/1940-6207.CAPR-09-0192 DO - 10.1158/1940-6207.CAPR-09-0192 ID - Boyle2010 ER - TY - JOUR AU - Hubner, R. -. H. AU - Schwartz, J. D. AU - Bishnu, P. AU - Ferris, B. AU - Omberg, L. AU - Mezey, J. G. AU - Hackett, N. R. AU - Crystal, R. G. PY - 2009 DA - 2009// TI - Coordinate control of expression of Nrf2-modulated genes in the human small airway epithelium is highly responsive to cigarette smoking JO - Mol Med VL - 15 ID - Hubner2009 ER - TY - JOUR AU - Zhang, X. AU - Sebastiani, P. AU - Liu, G. AU - Schembri, F. AU - Zhang, X. AU - Dumas, Y. M. AU - Langer, E. M. AU - Alekseyev, Y. AU - O’Connor, G. T. AU - Brooks, D. R. PY - 2010 DA - 2010// TI - Similarities and differences between smoking-related gene expression in nasal and bronchial epithelium JO - Physiol Genomics VL - 41 UR - https://doi.org/10.1152/physiolgenomics.00167.2009 DO - 10.1152/physiolgenomics.00167.2009 ID - Zhang2010 ER - TY - JOUR AU - Doyle, I. AU - Ratcliffe, M. AU - Walding, A. AU - Vanden Bon, E. AU - Dymond, M. AU - Tomlinson, W. AU - Tilley, D. AU - Shelton, P. AU - Dougall, I. PY - 2010 DA - 2010// TI - Differential gene expression analysis in human monocyte-derived macrophages: impact of cigarette smoke on host defence JO - Mol Immunol VL - 47 UR - https://doi.org/10.1016/j.molimm.2009.11.008 DO - 10.1016/j.molimm.2009.11.008 ID - Doyle2010 ER - TY - JOUR AU - Leeuwen, D. M. AU - Gottschalk, R. W. AU - Herwijnen, M. H. AU - Moonen, E. J. AU - Kleinjans, J. C. AU - Delft, J. H. PY - 2005 DA - 2005// TI - Differential gene expression in human peripheral blood mononuclear cells induced by cigarette smoke and its constituents JO - Toxicol Sci VL - 86 UR - https://doi.org/10.1093/toxsci/kfi168 DO - 10.1093/toxsci/kfi168 ID - Leeuwen2005 ER - TY - JOUR AU - Wright, W. R. AU - Parzych, K. AU - Crawford, D. AU - Mein, C. AU - Mitchell, J. A. AU - Paul-Clark, M. J. PY - 2012 DA - 2012// TI - Inflammatory transcriptome profiling of human monocytes exposed acutely to cigarette smoke JO - PLoS One VL - 7 UR - https://doi.org/10.1371/journal.pone.0030120 DO - 10.1371/journal.pone.0030120 ID - Wright2012 ER - TY - JOUR AU - Arimilli, S. AU - Damratoski, B. E. AU - Bombick, B. AU - Borgerding, M. F. AU - Prasad, G. L. PY - 2012 DA - 2012// TI - Evaluation of cytotoxicity of different tobacco product preparations JO - Regul Toxicol Pharmacol VL - 64 UR - https://doi.org/10.1016/j.yrtph.2012.09.004 DO - 10.1016/j.yrtph.2012.09.004 ID - Arimilli2012 ER - TY - JOUR AU - Gao, H. AU - Prasad, G. L. AU - Zacharias, W. PY - 2013 DA - 2013// TI - Differential cell-specific cytotoxic responses of oral cavity cells to tobacco preparations JO - Toxicol in Vitro VL - 27 UR - https://doi.org/10.1016/j.tiv.2012.07.015 DO - 10.1016/j.tiv.2012.07.015 ID - Gao2013 ER - TY - JOUR AU - Arimilli, S. AU - Damratoski, B. E. AU - Prasad, G. L. PY - 2013 DA - 2013// TI - Combustible and non-combustible tobacco product preparations differentially regulate human peripheral blood mononuclear cell functions JO - Toxicol in Vitro VL - 27 UR - https://doi.org/10.1016/j.tiv.2013.06.015 DO - 10.1016/j.tiv.2013.06.015 ID - Arimilli2013 ER - TY - JOUR AU - Mian, M. F. AU - Lauzon, N. M. AU - Stampfli, M. R. AU - Mossman, K. L. AU - Ashkar, A. A. PY - 2008 DA - 2008// TI - Impairment of human NK cell cytotoxic activity and cytokine release by cigarette smoke JO - J Leukoc Biol VL - 83 UR - https://doi.org/10.1189/jlb.0707481 DO - 10.1189/jlb.0707481 ID - Mian2008 ER - TY - JOUR AU - Hahn, M. E. AU - Allan, L. L. AU - Sherr, D. H. PY - 2009 DA - 2009// TI - Regulation of constitutive and inducible AHR signaling: complex interactions involving the AHR repressor JO - Biochem Pharmacol VL - 77 UR - https://doi.org/10.1016/j.bcp.2008.09.016 DO - 10.1016/j.bcp.2008.09.016 ID - Hahn2009 ER - TY - JOUR AU - Gao, X. AU - Jia, M. AU - Zhang, Y. AU - Breitling, L. P. AU - Brenner, H. PY - 2015 DA - 2015// TI - DNA methylation changes of whole blood cells in response to active smoking exposure in adults: a systematic review of DNA methylation studies JO - Clin Epigenetics. VL - 7 UR - https://doi.org/10.1186/s13148-015-0148-3 DO - 10.1186/s13148-015-0148-3 ID - Gao2015 ER - TY - JOUR AU - Xu, L. AU - Cheng, C. AU - George, E. O. AU - Homayouni, R. PY - 2012 DA - 2012// TI - Literature aided determination of data quality and statistical significance threshold for gene expression studies JO - BMC Genomics VL - 13 ID - Xu2012 ER - TY - JOUR AU - Xu, L. AU - Furlotte, N. AU - Lin, Y. AU - Heinrich, K. AU - Berry, M. W. AU - George, E. O. AU - Homayouni, R. PY - 2011 DA - 2011// TI - Functional cohesion of gene sets determined by latent semantic indexing of PubMed abstracts JO - PLoS One VL - 6 UR - https://doi.org/10.1371/journal.pone.0018851 DO - 10.1371/journal.pone.0018851 ID - Xu2011 ER - TY - JOUR AU - Subramanian, A. AU - Tamayo, P. AU - Mootha, V. K. AU - Mukherjee, S. AU - Ebert, B. L. AU - Gillette, M. A. AU - Paulovich, A. AU - Pomeroy, S. L. AU - Golub, T. R. AU - Lander, E. S. PY - 2005 DA - 2005// TI - Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles JO - Proc Natl Acad Sci U S A VL - 102 UR - https://doi.org/10.1073/pnas.0506580102 DO - 10.1073/pnas.0506580102 ID - Subramanian2005 ER -