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Fig. 4 | BMC Genomics

Fig. 4

From: Exploratory bioinformatics investigation reveals importance of “junk” DNA in early embryo development

Fig. 4

Enrichment of SINE elements in genes upregulated in the late 2-cell stage. a Average fold-change for 24 groups of 500 genes. b Relative enrichment (red) or depletion (green) of repeat elements in the promoters of genes in these groups. c FDR values derived from Chi-square tests of independency of repeat element frequency and gene groups. d Correlation of fold-change in 2C with the presence of B1 elements in gene groups. Each point in the plot represents one group of 500 genes. The vertical axis represents the percentage of genes in the group with B1_Mus2 in their promoters, while the horizontal axis represents average fold-change. e Association of repeats with fold-change during the late 2-cell stage. The average fold change of genes with one or more repeats within 2 kb on either sense or antisense strand

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