Fig. 3

a The intersection of 3 lncRNA annotations: iPSC with guide annotations, iPSC without guide, and GENCODE lncRNAs expressed in iPSCs. Over 90% of FEELnc human lncRNAs overlap with GENCODE lncRNAs. b The proportions in each primate lncRNA annotation compared to the genomic TE proportion. Only lncRNAs that overlap TEs are included in these proportions. c The proportion of human lncRNA sequence made up by TE families normalized by proportion of the genomic sequence made up by each family. The top 5 families from each of the 4 main classes are shown. d TEs that occur most frequently in human iPSC lncRNAs normalized by the size of each TE family. Only families with more than 10 members are shown. Red represents lncRNAs which are conserved in all 4 primate species. Green are those conserved in 1 or 2 other NHPs. Blue are human specific lncRNAs