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Table 1 Keywords and values in PreMeta script file

From: PreMeta: a tool to facilitate meta-analysis of rare-variant associations

Keyword

Value

SOFTWARE

Software program for study-level analysis

VERSION

Version of the software

FILE

Name of the file generated by MASS

FILE_SCORE

Name of the score file generated by RAREMETAL

FILE_COV

Name of the covariance file generated by RAREMETAL

FILE_GROUP

Name of the file that defines the gene-level grouping

FILE_MSSD

Name of the MSSD file generated by MetaSKAT

FILE_MINFO

Name of the MINFO file generated by MetaSKAT

FILE_RDATA

Name of the RDATA file containing the SeqMeta object

RESCALE

Original trait variance to rescale summary statistics for INT

SNP_INFO

Name of the file listing reference and alternative alleles for all SNPs