Skip to main content

Advertisement

Fig. 6 | BMC Genomics

Fig. 6

From: NucTools: analysis of chromatin feature occupancy profiles from high-throughput sequencing data

Fig. 6

Exemplary heat maps calculated using Cluster Maps Builder. ae Nucleosome occupancy in ESCs from Voong et al. [24] (“complete digestion”, GSM2183911) around common CTCF sites present both in ESCs and MEFs defined as in [84], sorted according to the average occupancy value in the [−2000, 2000] region (a), CTCF binding site score (b), k-means clustering with 5 clusters based on nucleosome occupancy in the [−500, 500] region (c), k-means clustering with 10 clusters based on nucleosome occupancy in [−500, 500] region (d), k-means clustering with 10 clusters based on nucleosome occupancy in [−2000, 2000] region (e). f Nucleosome occupancy in MEFs [84] (GSM1004654) around common CTCF sites present both in ESCs and MEFs, sorted as in panel e

Back to article page