Table 1 Summary of sequencing results according to the annotation performed in this study of the MSC transcriptome based on the sheep genome reference Oar_v3.1
From: Variant discovery in the sheep milk transcriptome using RNA sequencing
Total Reads (paired end) | 119325116 | ||
|---|---|---|---|
Total Tags | 120473958 | ||
Total Assigned | 110083502 | ||
Group | Total_bases | Tag_count | Tags/kb |
CDSa_Exons | 32776750 | 65846229.88 | 2008.93 |
5′UTRb_Exons | 3479917 | 960588.13 | 276.04 |
3′UTRc_Exons | 8651433 | 4457991.13 | 515.29 |
Introns | 803999021 | 13554137.88 | 16.86 |
TSSd_up_1kb | 21995006 | 933617.50 | 42.45 |
TSS_up_5kb | 101300701 | 2521024.00 | 24.89 |
TSS_up_10kb | 187280303 | 3117103.63 | 16.64 |
TESe_down_1kb | 21770670 | 10545653.88 | 484.40 |
TES_down_5kb | 96011366 | 21156069.50 | 220.35 |
TES_down_10kb | 173072739 | 22147451.25 | 127.97 |