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Table 1 Summary of sequencing results according to the annotation performed in this study of the MSC transcriptome based on the sheep genome reference Oar_v3.1

From: Variant discovery in the sheep milk transcriptome using RNA sequencing

Total Reads (paired end)   119325116
Total Tags   120473958
Total Assigned   110083502
Group Total_bases Tag_count Tags/kb
CDSa_Exons 32776750 65846229.88 2008.93
5′UTRb_Exons 3479917 960588.13 276.04
3′UTRc_Exons 8651433 4457991.13 515.29
Introns 803999021 13554137.88 16.86
TSSd_up_1kb 21995006 933617.50 42.45
TSS_up_5kb 101300701 2521024.00 24.89
TSS_up_10kb 187280303 3117103.63 16.64
TESe_down_1kb 21770670 10545653.88 484.40
TES_down_5kb 96011366 21156069.50 220.35
TES_down_10kb 173072739 22147451.25 127.97
  1. a CDS Coding DNA sequence; b 5′UTR leader untranslated sequence; c 3′UTR trailer untranslated sequence; d TSS Transcription Start Site; e TES Transcription End Site