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Table 2 Summary statistics of the identified variants

From: Variant discovery in the sheep milk transcriptome using RNA sequencing

Fields Counts SnpEff Counts VEP
Variants processed 216637 212742
  SNPs 197948 195503
  Insertions 8603 7233
  Deletions 10086 9032
Effects by impact  
  HIGH 2128 1891
  MODERATE 22440 22385
  LOW 43986 43667
  MODIFIER 312170 232768
Effects by type  
  3_prime_UTR 12940 12950
  5_prime_UTR 1819 1824
  downstream_gene 113225 113207
  frameshift 1162 1096
  inframe_deletion 168 314
  inframe_insertion 127 229
  intergenic_region 96639 16991
  intron 59198 58408
  missense 21841 21824
  non_coding_exon 2002 1993
  non_coding_transcript 10 9492
  splice_acceptor 525 332
  splice_donor 594 371
  splice_region 2353 2187
  start_lost 16 28
  stop_gained 119 112
  stop_lost 28 30
  stop_retained 26 31
  synonymous 43003 43004
  upstream_gene 27952 27948