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Fig. 1 | BMC Genomics

Fig. 1

From: RNA-seq of life stages of the oomycete Phytophthora infestans reveals dynamic changes in metabolic, signal transduction, and pathogenesis genes and a major role for calcium signaling in development

Fig. 1

Overview of mRNA during development. a heatmap of mRNA levels in isolate 1306 from non-sporulating mycelia (MY), purified sporangia (SP), sporangia chilled in water to induce the cleavage of sporangia into zoospores (CL), zoospores released from the sporangia (ZO), and germinated cysts (GC). Cartoons illustrating each stage are shown in Fig. 2. Data are TMM-normalized CPM values subjected to per-gene normalization and then hierarchical clustering using the Euclidean average linkage method. b Principal component analysis of samples from isolates 1306 (squares) and 88069 (circles), labelled as in panel a. The data in both panels were filtered to only include genes with CPM ≥ 1.0

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