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Fig. 4 | BMC Genomics

Fig. 4

From: RNA-seq of life stages of the oomycete Phytophthora infestans reveals dynamic changes in metabolic, signal transduction, and pathogenesis genes and a major role for calcium signaling in development

Fig. 4

Expression patterns of major classes of regulatory genes. Indicated are data from nonsporulating mycelia (MY), sporangia (SP), cleaving sporangia (CL), zoospores (ZO), and germinated cysts (GC) of isolate 1306. In most panels, the genes are labeled with their five-digit gene number (i.e. 03676) and an abbreviation for the functional subclass. Labels are not shown for protein kinases and phosphatases due to space limitations, but the data are in Additional file 3. Below most panels are small heatmaps that indicate the sum of CPM values for genes in subclasses (Σ CPM, with the number of genes in parentheses), or all genes (ALL). Gene numbers not shown are presented in Additional file 5. a cation channel. b calcium binding. c cyclic nucleotide. d transcription factor. e protein kinase. f protein phosphatase

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BMC Genomics

ISSN: 1471-2164

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