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Table 1 Over-represented GO terms common to 1306 and 88069 developmenta

From: RNA-seq of life stages of the oomycete Phytophthora infestans reveals dynamic changes in metabolic, signal transduction, and pathogenesis genes and a major role for calcium signaling in development

Stage

GO Term

Definition

Typeb

1306 FDRc

88069 FDRc

Sporangia vs. hyphae

GO:0005929

cilium

CC

1.8E-41

3.3E-38

GO:0023052

signaling

BP

2.2E-25

1.0E-16

GO:0005856

cytoskeleton

CC

2.2E-24

5.7E-30

GO:0000902

cell morphogenesis

BP

7.9E-19

3.0E-21

GO:0005886

plasma membrane

CC

1.3E-18

6.3E-11

GO:0004674

protein serine/threonine kinase

MF

2.1E-14

1.5E-09

GO:0005261

cation channel activity

MF

6.1E-13

5.8E-11

GO:0003774

motor activity

MF

1.1E-09

9.5E-09

GO:0005524

ATP binding

MF

1.9E-08

1.0E-07

GO:0009187

cyclic nucleotide metabolic process

BP

1.7E-07

2.7E-04

GO:0005509

calcium ion binding

MF

4.2E-06

2.7E-04

GO:0004872

receptor activity

MF

1.3E-04

7.3E-05

GO:0008092

cytoskeletal protein binding

MF

6.6E-03

1.4E-04

Zoospore vs. sporangia

GO:0044426

cell wall part

CC

1.7E-10

9.3E-07

GO:0004674

protein serine/threonine kinase

MF

6.6E-10

7.2E-09

GO:0016837

carbon-oxygen lyase, polysaccharide

MF

2.8E-06

2.8E-06

GO:0030570

pectate lyase activity

MF

1.8E-05

1.8E-05

GO:0050525

cutinase activity

MF

1.8E-05

4.9E-04

GO:0004748

ribonucleoside-diphosphate reductase

MF

1.3E-03

1.3E-03

GO:0016835

carbon-oxygen lyase activity

MF

4.7E-03

4.7E-03

Germinating cysts vs. sporangia

GO:0000502

proteasome complex

CC

5.9E-11

—

GO:0004553

glycosyl hydrolase activity

MF

3.8E-08

—

GO:1901575

organic substance catabolic process

BP

3.1E-06

—

GO:0016054

organic acid catabolic process

BP

6.0E-06

—

GO:1902221

PEP family amino acid metabolism

BP

2.9E-05

—

GO:0005975

carbohydrate metabolic process

BP

3.5E-05

—

GO:1901565

organonitrogen compound catabolism

BP

3.7E-05

—

GO:0005576

extracellular region

CC

1.1E-04

—

GO:0031988

membrane-bounded vesicle

CC

6.3E-04

—

GO:0005759

mitochondrial matrix

CC

1.1E-03

—

GO:0003868

4-hydroxyphenylpyruvate dioxygenase

MF

2.6E-03

—

GO:0045454

cell redox homeostasis

BP

3.1E-03

—

GO:0016885

ligase, forming carbon-carbon bonds

MF

4.9E-03

—

GO:0016052

carbohydrate catabolic process

BP

5.9E-03

—

GO:0004650

polygalacturonase activity

MF

6.0E-03

—

GO:0004298

threonine-type endopeptidase

MF

7.6E-03

—

  1. a After removing redundant terms and merging groups having >75% of genes in common
  2. b BP, biological process; MF, molecular function; CC, cellular component
  3. c False discovery rate, corrected for multiple testing by Benjamini-Hochberg method