Name | Start position in the genome | Length | Strand | Number of transcriptome reads | Number of footprint reads | RPKM transcriptome | RPKM footprints | RCV | P value* | Northern Blot/Shine Dalgarno |
---|---|---|---|---|---|---|---|---|---|---|
DicF_1/Z1327 | 1255006 | 52 | - | 2 | 7 | 2 | 16 | 8.00 | 1.55E-11 | |
STnc70 | 719959 | 94 | + | 47 | 141 | 28 | 182 | 6.50 | 4.83E-11 | |
RyhB | 4367464 | 65 | - | 92 | 192 | 80 | 359 | 4.49 | 1.77E-09 | |
OmrA-B_2 | 3766084 | 82 | - | 504 | 844 | 348 | 1251 | 3.59 | 1.47E-08 | |
OrzO-P_2 | 2954314 | 76 | + | 5057 | 8198 | 3764 | 13114 | 3.48 | 1.97E-08 | taaagtggt |
STnc100_10 | 2995675 | 210 | - | 496 | 742 | 134 | 430 | 3.21 | 4.12E-08 | tatgggata |
STnc550 | 2412748 | 391 | - | 533 | 779 | 77 | 242 | 3.14 | 4.96E-08 | caaatagtg |
RtT_3 | 1824178 | 132 | - | 22 | 28 | 9 | 26 | 2.89 | 1.03E-07 | |
RprA | 2445280 | 108 | + | 568 | 745 | 297 | 839 | 2.82 | 1.25E-07 | |
STnc180 | 2250970 | 203 | - | 1225 | 1534 | 341 | 919 | 2.70 | 1.86E-07 | caagcgggg |
GadY | 4474223 | 114 | + | 213 | 248 | 106 | 264 | 2.49 | 3.55E-07 | |
STnc630 | 5216481 | 166 | + | 502 | 572 | 171 | 419 | 2.45 | 4.05E-07 | aacggagga |
STnc100_1 | 902843 | 159 | + | 1046 | 1049 | 372 | 802 | 2.16 | 1.11E-06 | |
CyaR_RyeE | 2912765 | 86 | + | 16620 | 16668 | 10932 | 23563 | 2.16 | 1.11E-06 | |
sroE | 3426663 | 92 | - | 64 | 63 | 39 | 83 | 2.13 | 1.22E-06 | |
Z6077/DicF_4 | 2325956 | 52 | + | 118 | 112 | 128 | 262 | 2.05 | 1.64E-06 | |
C0299 | 1763522 | 79 | + | 1 | 1 | 1 | 2 | 2.00 | 1.96E-06 | |
RtT_2 | 1824000 | 132 | - | 3 | 2 | 1 | 2 | 2.00 | 1.96E-06 | gaccaaggt |
QUAD_7 | 4002118 | 150 | - | 859 | 791 | 324 | 641 | 1.98 | 2.12E-06 | |
tpke11 | 14107 | 78 | + | 59 | 51 | 43 | 79 | 1.84 | 3.64E-06 | |
STnc100_5 | 1866224 | 209 | + | 5038 | 4068 | 1364 | 2366 | 1.73 | 5.48E-06 | |
MicA | 3606250 | 72 | + | 1500 | 1180 | 1178 | 1992 | 1.69 | 6.54E-06 | |
STnc100_3 | 1353605 | 206 | + | 2403 | 1688 | 660 | 996 | 1.51 | 1.41E-05 | |
sroD | 2565135 | 86 | - | 94 | 65 | 62 | 92 | 1.48 | 1.58E-05 | |
MicC | 2113860 | 122 | - | 43 | 29 | 20 | 29 | 1.45 | 1.83E-05 | |
frnS | 2168565 | 118 | - | 175 | 106 | 84 | 109 | 1.30 | 3.70E-05 | tcagggcaa |
OmrA-B_1 | 3765887 | 88 | - | 696 | 380 | 447 | 525 | 1.17 | 6.73E-05 | |
ArcZ | 4160147 | 108 | + | 3234 | 1708 | 1694 | 1923 | 1.14 | 8.20E-05 | |
STnc130 | 1161203 | 135 | - | 2 | 1 | 1 | 1 | 1.00 | 1.66E-04 | |
STnc560 | 1939628 | 214 | + | 132 | 58 | 35 | 33 | 0.94 | 2.27E-04 | |
sraL | 5161197 | 141 | - | 627 | 265 | 252 | 228 | 0.90 | 2.81E-04 | |
RydB | 2439675 | 61 | - | 280 | 102 | 260 | 203 | 0.78 | 5.76E-04 | |
RtT_4 | 1824474 | 131 | - | 30 | 10 | 13 | 9 | 0.69 | 9.91E-04 | |
sroC | 767984 | 163 | - | 3945 | 1269 | 1369 | 946 | 0.69 | 9.99E-04 | |
CRISPR-DR4_2 | 1058550 | 28 | + | 3 | 1 | 6 | 4 | 0.67 | 1.16E-03 | |
STnc100_2 | 1267542 | 167 | + | 3718 | 1129 | 1259 | 822 | 0.65 | 1.27E-03 | |
sok_15/sokX | 3674872 | 152 | - | 93 | 28 | 35 | 22 | 0.63 | 1.49E-03 | tcaggtata |
STnc100_4 | 1641323 | 191 | + | 4486 | 1215 | 1329 | 773 | 0.58 | 2.02E-03 | positive |
GcvB | 3732394 | 206 | + | 13532 | 3307 | 3716 | 1952 | 0.53 | 2.96E-03 | negative/tgagccgga |
Spot_42/spf | 4914606 | 119 | + | 323 | 77 | 154 | 79 | 0.51 | 3.22E-03 | gtagggtac |
STnc450 | 5326800 | 58 | - | 20 | 5 | 20 | 10 | 0.50 | 3.52E-03 | |
CRISPR-DR4_1 | 1058490 | 28 | + | 4 | 1 | 8 | 4 | 0.50 | 3.52E-03 | |
STAXI_4 | 1482887 | 131 | + | 4 | 1 | 2 | 1 | 0.50 | 3.52E-03 | |
RybB | 1014999 | 79 | - | 1953 | 439 | 1398 | 676 | 0.48 | 3.95E-03 | gcagggcat |
sroB | 572997 | 84 | + | 704 | 151 | 474 | 219 | 0.46 | 4.59E-03 | |
P26 | 5058572 | 62 | + | 261 | 52 | 238 | 102 | 0.43 | 5.83E-03 | |
sok_14 | 2777459 | 175 | - | 1539 | 298 | 497 | 207 | 0.42 | 6.35E-03 | tgaggccca |
sroH | 5068058 | 161 | - | 606 | 114 | 213 | 86 | 0.40 | 6.97E-03 | |
DicF_2 | 1881271 | 52 | - | 5 | 1 | 5 | 2 | 0.40 | 7.16E-03 | |
rdlD_3 | 1807675 | 60 | + | 58 | 10 | 55 | 20 | 0.36 | 9.36E-03 | |
OrzO-P_1 | 2953705 | 74 | + | 7227 | 1195 | 5524 | 1963 | 0.36 | 9.96E-03 | |
sok_10 | 1888482 | 175 | + | 3663 | 598 | 1184 | 415 | 0.35 | 1.03E-02 | tgaggctca |
ryfA | 3444344 | 305 | + | 16 | 3 | 3 | 1 | 0.33 | 1.18E-02 | |
IS061 | 2172064 | 180 | - | 10 | 1 | 3 | 1 | 0.33 | 1.18E-02 | |
rdlD_4 | 4509509 | 66 | + | 78 | 11 | 67 | 20 | 0.30 | 1.49E-02 | |
rdlD_2 | 1807146 | 60 | + | 59 | 8 | 56 | 16 | 0.30 | 0.02 | |
sok_7 | 1480784 | 158 | + | 2602 | 366 | 932 | 282 | 0.29 | 0.02 | |
RyeB | 2600241 | 100 | - | 2380 | 314 | 1346 | 382 | 0.28 | 0.02 | |
QUAD_1 | 2898598 | 149 | + | 358 | 47 | 136 | 38 | 0.28 | 0.02 | |
MicF | 3117339 | 94 | + | 1059 | 132 | 637 | 171 | 0.27 | 0.02 | |
STnc100_6 | 1893978 | 190 | + | 6373 | 703 | 1897 | 450 | 0.24 | 0.03 | |
OxyS | 5033797 | 110 | - | 106 | 11 | 55 | 12 | 0.22 | 0.03 | |
arrS | 4467416 | 69 | - | 266 | 22 | 201 | 36 | 0.18 | 0.04 | |
istR | 4712705 | 130 | - | 99 | 8 | 43 | 7 | 0.16 | 0.05 | |
SraB | 1590770 | 169 | + | 511 | 38 | 171 | 27 | 0.16 | 0.05 | |
QUAD_6 | 4001742 | 150 | - | 771 | 54 | 291 | 44 | 0.15 | 0.06 | |
DsrA | 2725072 | 87 | - | 82 | 6 | 53 | 8 | 0.15 | 0.06 | |
StyR-44_7 | 5087479 | 109 | + | 1784 | 125 | 926 | 139 | 0.15 | 0.06 | |
QUAD_5 | 3861645 | 151 | + | 1621 | 113 | 607 | 91 | 0.15 | 0.06 | |
StyR-44_5 | 4902290 | 109 | + | 1846 | 127 | 958 | 142 | 0.15 | 0.06 | |
QUAD_4 | 3861252 | 151 | + | 2395 | 153 | 897 | 123 | 0.14 | 0.07 | |
StyR-44_4 | 4806012 | 109 | + | 1761 | 112 | 914 | 125 | 0.14 | 0.07 | |
StyR-44_1 | 228975 | 109 | + | 1908 | 111 | 990 | 124 | 0.13 | 0.08 | |
STnc240 | 2830003 | 75 | - | 112 | 6 | 84 | 10 | 0.12 | 0.08 | |
Bacteria_small_SRP /ffs | 542524 | 97 | + | 230378 | 12741 | 134343 | 15969 | 0.12 | 0.08 | positive |
STnc100_9 | 2773346 | 167 | - | 3475 | 184 | 1177 | 134 | 0.11 | 0.09 | |
GlmZ_SraJ_2 | 4848834 | 207 | + | 7351 | 364 | 2009 | 214 | 0.11 | 0.10 | positive |
SraC_RyeA | 2600138 | 145 | + | 2011 | 91 | 784 | 76 | 0.10 | 0.12 | |
GlmY_tke1_2 | 4848836 | 149 | + | 7310 | 323 | 2775 | 264 | 0.10 | 0.12 | |
StyR-44_6 | 5046470 | 109 | + | 4004 | 161 | 2078 | 180 | 0.09 | 0.14 | |
STnc100_8 | 2314989 | 167 | - | 706 | 23 | 239 | 17 | 0.07 | 0.19 | |
RtT_1 | 867059 | 143 | + | 3357 | 102 | 1328 | 87 | 0.07 | 0.21 | |
C4_2 | 2673794 | 88 | + | 108363 | 3042 | 69654 | 4203 | 0.06 | 0.23 | |
sok_6 | 1389612 | 175 | - | 934 | 22 | 302 | 15 | 0.05 | 0.29 | |
STnc100_7 | 2145571 | 190 | - | 327 | 7 | 97 | 4 | 0.04 | 0.35 | |
CsrB | 3714213 | 360 | - | 43044 | 748 | 6763 | 253 | 0.04 | 0.38 | |
CsrC | 4915753 | 254 | + | 25764 | 425 | 5738 | 203 | 0.04 | 0.40 | |
RydC | 2079463 | 64 | + | 1636 | 27 | 1446 | 51 | 0.04 | 0.40 | |
RNaseP_bact_a /rnpB | 4077043 | 377 | - | 39359 | 640 | 5905 | 206 | 0.03 | 0.40 | |
GlmZ_SraJ_1 | 3481543 | 185 | - | 7668 | 122 | 2345 | 80 | 0.03 | 0.41 | |
GlmY_tke1_1 | 3481544 | 148 | - | 7634 | 119 | 2918 | 98 | 0.03 | 0.42 | |
6S/ssrS | 3860420 | 184 | + | 470148 | 7239 | 144532 | 4783 | 0.03 | 0.42 | |
QUAD_3 | 2899260 | 144 | + | 3436 | 44 | 1350 | 37 | 0.03 | 0.47 | |
symR | 5467620 | 77 | + | 726 | 6 | 533 | 9 | 0.02 | 0.60 | |
sRNA-Xcc1 | 1392052 | 89 | - | 40293 | 290 | 25609 | 396 | 0.02 | 0.62 | |
rdlD_1 | 1806611 | 66 | + | 2090 | 8 | 1791 | 15 | 0.01 | 0.76 | |
StyR-44_3 | 4229125 | 109 | - | 2523 | 2 | 1309 | 2 | 0.00 | 0.96 | |
StyR-44_2 | 3519339 | 109 | - | 2499 | 1 | 1297 | 1 | 0.00 | 0.97 | |
HPnc0260 | 2421623 | 163 | - | 1 | 0 | 0 | 0 | N/A | N/A | |
rseX | 2733408 | 90 | + | 4 | 0 | 3 | 0 | N/A | N/A | |
sok_12 | 2152486 | 125 | - | 13 | 0 | 6 | 0 | N/A | N/A | |
SraG | 4120940 | 172 | + | 1 | 0 | 0 | 0 | N/A | N/A | |
STAXI_1 | 1087216 | 64 | + | 6 | 0 | 5 | 0 | N/A | N/A | |
STAXI_2 | 1087280 | 131 | + | 2 | 0 | 1 | 0 | N/A | N/A | |
STAXI_3 | 1482823 | 64 | + | 3 | 0 | 3 | 0 | N/A | N/A | |
STnc100_11 | 3553828 | 189 | - | 387 | 0 | 116 | 0 | N/A | N/A | |
STnc410 | 4777710 | 158 | + | 3 | 0 | 1 | 0 | N/A | N/A | |
tp2 | 127504 | 114 | - | 1 | 0 | 0 | 0 | N/A | N/A | |
sraA | 524870 | 96 | - | 0 | 0 | 0 | 0 | N/A | N/A | |
STnc480 | 635390 | 67 | + | 0 | 0 | 0 | 0 | N/A | N/A | |
sar | 1661162 | 67 | - | 0 | 0 | 0 | 0 | N/A | N/A | |
group-II-D1D4-2 | 2037712 | 118 | - | 0 | 0 | 0 | 0 | N/A | N/A | |
DicF_3 | 2159230 | 56 | + | 0 | 0 | 0 | 0 | N/A | N/A | |
C0465 | 2649880 | 76 | + | 0 | 0 | 0 | 0 | N/A | N/A | |
STnc430 | 5118969 | 150 | - | 0 | 0 | 0 | 0 | N/A | N/A |