Differentiation of ncRNAs from small mRNAs in Escherichia coli O157:H7 EDL933 (EHEC) by combined RNAseq and RIBOseq – ryhB encodes the regulatory RNA RyhB and a peptide, RyhP

Table 3 Expression of exemplary novel ncRNAs under 11 different growth conditions (MM, minimal medium)

Name	Length [nt]	LB plain	MM	LB + nitrite	LB pH9	Radish sprouts	Spinach juice	LB 15°C	LB + antibiotics	Cow dung	LB solid medium	LB pH4
ncR1085800	72	4177	4563	4990	345	25504	3228	1940	655	11683	1410	9815
ncR1114186	94	641	0	416	684	102	29	1382	0	65	246	26
ncR1481381	99	2774	3227	3740	291	19298	2504	1266	411	8632	1108	6997
ncR1483108	77	128	188	223	46	31	79	33	42	0	48	32
ncR1509794	96	628	0	529	628	50	7	1407	0	51	288	43
ncR1641710	114	168	356	662	533	504	183	215	14	21	65	7
ncR1854285	91	153	30	45	10	92	30	34	232	27	8	109
ncR1864748	174	23	26	24	3	28	4	24	262	28	13	19
ncR1868696	103	293	210	353	185	267	59	387	16	106	43	48
ncR1999946	51	34	18	215	43	117	0	251	0	95	0	0
ncR2585184	44	119	41	109	20	27	76	372	0	0	51	0
ncR348122	91	382	30	324	136	355	1440	1152	36	67	172	244
ncR3526958	96	18	28	21	5	212	56	112	0	101	8	69
ncR4137844	268	551	249	558	821	304	283	1113	55	77	265	55
ncR4546182	36	129	75	343	135	0	0	227	0	34	207	0
ncR4853400	65	134	139	369	341	331	341	102	0	75	149	0
ncR612919	36	80	50	38	49	0	224	0	0	34	21	0

The RPKM values for each condition are shown. The experimental setup is described in Landstorfer et al. [17]; data for all novel ncRNAs can be found in Additional file 7: Table S5

ISSN: 1471-2164