miRNA | Target gene | Target annotation | Cleavage site(nt) | Target site location | Class | Abundance in D1 (RP10M) | Abundance in D2 (RP10M) |
---|---|---|---|---|---|---|---|
ahy-miR156/157 | Araip.QT8AK.1 | Squamosa promoter binding protein | 999 | CDS | 0 | 93 | 54 |
Araip.0ZF73.1 | Squamosa promoter binding protein | 2069 | 3′-UTR | 0 | 27 | 28 | |
Araip.II3JP.1 | Squamosa promoter binding protein | 1557 | 3′-UTR | 0 | 628 | 127 | |
Araip.RD4BX.1 | Squamosa promoter binding protein | 1423 | 3′-UTR | 0 | 64 | 124 | |
ahy-miR159 | Araip.B1U9G.1 | MYB transcription factor | 661 | CDS | 0 | 7 | 33 |
Araip.0279H.1 | MYB transcription factor | 1506 | CDS | 0 | 2 | 3 | |
ahy-miR160 | Araip.NYM6Q.1 | Auxin response factor | 1364 | CDS | 0 | 67 | 46 |
Araip.BYV33.1 | Auxin response factor | 1429 | CDS | 0 | 257 | 430 | |
Araip.18474.1 | Digalactosyldiacylglycerol synthase | 1629 | CDS | 1 | 2 | 0 | |
Araip.9V70N.1 | Solute carrier | 955 | CDS | 0 | 15 | 72 | |
ahy-miR164 | Araip.D25HB.1 | Transcriptional factor NAC | 786 | CDS | 0 | 60 | 130 |
Araip.DLE10.1 | Heat shock protein | 580 | CDS | 1 | 10 | 12 | |
ahy-miR166 | Araip.IIT7G.1 | ARF GTPase-activating protein | 1048 | CDS | 0 | 4 | 3 |
Araip.P57FD.1 | Serine/threonine kinase | 552 | CDS | 0 | 10 | 40 | |
Araip.80WHH.1 | Peroxidase | 828 | CDS | 1 | 11 | 5 | |
Araip.8GH41.1 | Plastidic glucose transporter | 120 | CDS | 0 | 2 | 10 | |
ahy-miR167 | Araip.7M6VI.1 | Pentatricopeptide repeat protein (PPRP) | 1005 | CDS | 0 | 0 | 118 |
Araip.R1QSY.1 | Auxin response factor | 568 | CDS | 2 | 0 | 2 | |
ahy-miR168 | Araip.FPV8R.1 | Argonaute protein 1 | 379 | CDS | 0 | 113 | 188 |
ahy-miR169 | Araip.T3WCA.1 | Nuclear transcription factor Y | 971 | 3′-UTR | 0 | 45 | 130 |
ahy-miR171 | Araip.E00UL.1 | Transcription factor GRAS | 542 | CDS | 0 | 209 | 845 |
Araip.27I5U.1 | Gibberellin receptor | 290 | CDS | 1 | 0 | 5 | |
ahy-miR172 | Araip.Y07A4.1 | Ethylene-responsive transcription factor AP2 | 1253 | 5′-UTR | 0 | 476 | 965 |
Araip.AE7EH.1 | Cell division protease | 825 | CDS | 0 | 4 | 1 | |
 | Araip.HRN64.1 | Embryogenesis abundant protein | 55 | 5′-UTR | 1 | 3 | 7 |
ahy-miR319 | Araip.SZ7Q5.1 | Monodehydroascorbate reductase | 1263 | CDS | 0 | 88 | 52 |
Araip.Z17TF.1 | Transcription factor TCP | 1688 | CDS | 0 | 41 | 55 | |
Araip.KK7TK.1 | DELLA protein | 939 | CDS | 1 | 0 | 3 | |
ahy-miR390 | Araip.VT2PQ.1 | TAS3 | 342 | Â | 0 | 0 | 25 |
Araip.43TDN.1 | Solute carrier family 50 (sugar transporter) | 96 | CDS | 0 | 1 | 45 | |
ahy-miR391 | Araip.5A463.1 | Aluminium induced protein | 309 | CDS | 2 | 6 | 15 |
Araip.HW8E3.1 | Homeobox-leucine zipper protein | 2183 | CDS | 2 | 2 | 2 | |
Araip.65E1M.1 | LA RNA-binding protein | 2280 | CDS | 2 | 0 | 2 | |
ahy-miR393 | Araip.774UX.1 | Auxin signaling F-box protein | 1906 | CDS | 0 | 589 | 968 |
Araip.0E25I.1 | Auxin signaling F-box protein | 1710 | CDS | 0 | 296 | 429 | |
Araip.0XA60.1 | Auxin signaling F-box protein | 297 | CDS | 2 | 4 | 5 | |
Araip.NRD2A.1 | Brassinosteroid receptor kinase | 79 | CDS | 2 | 0 | 3 | |
ahy-miR394 | Araip.Y8EUA.1 | Glutathione S-transferase | 760 | CDS | 0 | 5 | 0 |
ahy-miR395 | Araip.BC9AA.1 | Cellulose synthase | 1531 | CDS | 0 | 6 | 3 |
ahy-miR396 | Araip.6YN77.1 | Growth-regulating factor | 922 | CDS | 0 | 422 | 97 |
Araip.SE9FW.1 | MADS-box transcription factor | 313 | CDS | 0 | 0 | 11 | |
ahy-miR397 | Araip.QA79V.1 | Laccase 10 (lignin catabolic process) | 743 | CDS | 0 | 8 | 5 |
Araip.Z5USZ.1 | Laccase 11 (lignin catabolic process) | 746 | CDS | 0 | 3 | 2 | |
ahy-miR398 | Araip.SEZ68.1 | Calcium-dependent protein kinase | 1309 | CDS | 1 | 2 | 0 |
ahy-miR399 | Araip.G5CUD.1 | Disease resistance protein | 4095 | CDS | 0 | 2 | 24 |
Araip.RXA31.1 | Expansin-A4(cell wall organization) | 958 | 5′-UTR | 0 | 8 | 4 | |
Araip.I7ZGU.1 | Unknown protein | 173 | CDS | 0 | 8 | 11 | |
ahy-miR414 | Araip.IJ273.1 | Ribosome biogenesis protein | 1818 | CDS | 0 | 8 | 20 |
Araip.467MQ.1 | Serine/threonine-protein phosphatase | 1586 | CDS | 0 | 10 | 13 | |
Araip.HJ37G.1 | Phosphoinositide phospholipase C | 1118 | CDS | 0 | 19 | 24 | |
Araip.Y25R8.1 | ARF guanine-nucleotide exchange factor | 755 | CDS | 0 | 23 | 38 | |
Araip.98Q8H.1 | Sequence-specific DNA binding transcription factor | 359 | CDS | 0 | 7 | 0 | |
Araip.FPJ1M.1 | DDB1-CUL4 associated factor (protein binding) | 5387 | CDS | 0 | 0 | 11 | |
ahy-miR477 | Araip.6IZ1V.1 | Mitogen-activated protein kinase | 147 | CDS | 0 | 2 | 2 |
Araip.48K15.1 | Heat shock cognate protein | 190 | CDS | 2 | 7 | 7 | |
Araip.A6M6K.1 | Cytosolic ascorbate peroxidase | 163 | CDS | 2 | 30 | 37 | |
Araip.BP9MY.1 | Myo-inositol-1-phosphate synthase | 34 | 5′-UTR | 0 | 0 | 15 | |
Araip.N0DQ0.1 | Dual specificity protein phosphatase | 33 | 5′-UTR | 0 | 0 | 2 | |
Araip.N1PSJ.1 | Glutamate synthase | 22 | CDS | 0 | 0 | 5 | |
Araip.SJE6C.1 | Unknown protein | 64 | CDS | 0 | 0 | 16 | |
ahy-miR482 | Araip.61H7R.1 | WD repeat-containing protein | 57 | CDS | 0 | 4 | 16 |
Araip.9T0HK.1 | E3 ubiquitin-protein ligase | 1029 | CDS | 0 | 48 | 44 | |
Araip.313YK.1 | E3 ubiquitin-protein ligase | 4548 | CDS | 2 | 0 | 3 | |
Araip.6W5RU.1 | E3 ubiquitin protein ligase | 1890 | CDS | 2 | 0 | 3 | |
Araip.NX28V.1 | Disease resistance protein | 3219 | 3′-UTR | 2 | 0 | 4 | |
Araip.BX1V3.1 | Disease resistance protein | 4147 | CDS | 2 | 0 | 2 | |
ahy-miR530 | Araip.87MXF.1 | Nuclear protein required for cytoskeleton organization | 2092 | CDS | 1 | 7 | 0 |
Araip.X3V04.1 | Unknown protein | 481 | CDS | 0 | 6 | 0 | |
Araip.YGJ1S.1 | Leucine-rich repeat receptor kinase | 1659 | CDS | 0 | 0 | 2 | |
ahy-miR1088 | Araip.6BJ8Z.1 | Pentatricopeptide repeat protein (PPRP) | 27 | 5′-UTR | 0 | 113 | 0 |
ahy-miR1507 | Araip.UGA40.1 | LRR-NB-ARC domain disease resistance protein | 4474 | CDS | 0 | 148 | 119 |
Araip.SJE6C.1 | DUF4228 domain protein | 64 | 5′-UTR | 0 | 11 | 16 | |
Araip.4Q4DB.1 | NBS-LRR domain disease resistance protein | 1036 | CDS | 0 | 21 | 0 | |
Araip.AX6A6.1 | Disease resistance protein | 880 | CDS | 0 | 14 | 0 | |
Araip.KW5UK.1 | Disease resistance protein | 939 | CDS | 0 | 14 | 0 | |
Araip.L51CJ.1 | Disease resistance protein | 880 | CDS | 0 | 14 | 0 | |
ahy-miR1511 | Araip.08W0L.1 | Protein binding protein | 174 | CDS | 0 | 0 | 2 |
Araip.PD52B.1 | Aluminum sensitive protein | 345 | CDS | 0 | 9 | 10 | |
ahy-miR1515 | Araip.9C688.1 | Chlorophyll a-b binding protein | 375 | CDS | 1 | 17 | 1 |
Araip.U8QGY.1 | DNA-lyase-like isoform | 963 | CDS | 0 | 0 | 9 | |
Araip.5RQ6Z.1 | ATP binding protein | 3153 | CDS | 0 | 32 | 0 | |
ahy-miR1520 | Araip.AW9H3.1 | DNA methyltransferase | 687 | CDS | 0 | 2 | 0 |
Araip.5K8JY.1 | DNA methyltransferase | 576 | CDS | 1 | 3 | 0 | |
Araip.LK5X5.1 | Protein kinase | 2471 | CDS | 2 | 0 | 5 | |
Araip.U0MS2.1 | Zinc finger CCCH domain-containing protein | 1559 | 3′-UTR | 2 | 0 | 2 | |
ahy-miR2111 | Araip.KV8TN.1 | Ubiquitin carboxyl-terminal hydrolase | 79 | CDS | 0 | 5 | 1 |
Araip.8SC4I.1 | Anaphase-promoting complex subunit | 426 | CDS | 1 | 2 | 0 | |
Araip.QW087.1 | Dihydroorotate dehydrogenase | 46 | 5′-UTR | 0 | 0 | 2 | |
ahy-miR2118 | Araip.B2Q36.1 | Translation initiation factor eIF | 1643 | CDS | 0 | 38 | 18 |
Araip.QG6DX.1 | Zinc finger protein | 3535 | CDS | 0 | 4 | 0 | |
Araip.NP9KT.1 | Carboxylate dehydrogenase | 1932 | 3′-UTR | 2 | 2 | 4 | |
Araip.E41BL.1 | Disease resistance protein | 344 | CDS | 0 | 0 | 9 | |
Araip.IKJ6N.1 | Disease resistance protein | 666 | CDS | 2 | 0 | 4 | |
ahy-miR2199 | Araip.I1L37.1 | bHLH transcription factor | 741 | CDS | 0 | 593 | 312 |
ahy-miR2628 | Araip.LY8H2.1 | Protein kinase | 55 | 5′-UTR | 0 | 24 | 22 |
ahy-miR3514 | Araip.GQ8VC.1 | Pentatricopeptide repeat protein (PPRP) | 360 | CDS | 0 | 2699 | 435 |
Araip.N7IGZ.1 | Pentatricopeptide repeat protein (PPRP) | 1134 | CDS | 0 | 53 | 4 | |
ahy-miR4376 | Araip.0K3S5.1 | Cullin-like protein | 2083 | CDS | 2 | 2 | 0 |
Araip.Q4HT6.1 | Methyltransferase | 2372 | CDS | 0 | 9 | 0 | |
Araip.NS167.1 | ATP-dependent RNA helicase-like protein | 2264 | CDS | 0 | 0 | 8 | |
ahy-miR4414 | Araip.B5L53.1 | DNA binding transcription factor | 989 | CDS | 1 | 2 | 0 |
ahy-miR5021 | Araip.166TL.1 | MADS-box transcription factor | 189 | 5′-UTR | 0 | 3 | 0 |
ahy-miR5225 | Araip.WG5D6.1 | Histidine kinase | 180 | CDS | 1 | 0 | 2 |
ahy-miR6300 | Araip.VJ5LB.1 | Dehydroascorbate reductase | 70 | CDS | 2 | 62 | 198 |
ahy-miR9666 | Araip.99HRK.1 | Protein kinase (protein ubiquitination process) | 537 | CDS | 1 | 2 | 0 |
ahy-miRn1 | Araip.9T0HK.1 | E3 ubiquitin protein ligase | 1260 | CDS | 0 | 45 | 43 |
Araip.71CS3.1 | Transcriptional factor NAC | 1420 | CDS | 0 | 81 | 241 | |
Araip.QG6DX.1 | Zinc finger protein | 3535 | 3′-UTR | 0 | 4 | 0 | |
ahy-miRn2 | Araip.C0ZFN.1 | LRR-NB-ARC domain disease resistance protein | 704 | CDS | 0 | 17 | 45 |
Araip.I8IY2.1 | TIR-NBS-LRR domain disease resistance protein | 3782 | CDS | 1 | 17 | 0 | |
ahy-miRn4 | Araip.JPM97.1 | Receptor kinase | 533 | CDS | 0 | 4 | 9 |
ahy-miRn5 | Araip.3TX6Y.1 | Unknown protein | 300 | CDS | 0 | 0 | 5 |
ahy-miRn7 | Araip.K65JZ.1 | Major intrinsic protein (transporter activity) | 189 | CDS | 0 | 319 | 1084 |
ahy-miRn10 | Araip.T99DR.1 | DNA polymerases (DNA replication) | 20 | CDS | 1 | 11 | 0 |
ahy-miRn24 | Araip.NF709.1 | Cytochrome P450 protein | 386 | CDS | 0 | 4 | 9 |